Literature DB >> 19636951

Sequence-specific 1H N, 13C, and 15N backbone resonance assignments of the 34 kDa Paramecium bursaria Chlorella virus 1 (PBCV1) DNA ligase.

Andrea Piserchio1, Pravin A Nair, Stewart Shuman, Ranajeet Ghose.   

Abstract

Chlorella virus DNA ligase (ChVLig) is a minimal (298-amino acid) pluripotent ATP-dependent ligase composed of three structural modules--a nucleotidyltransferase domain, an OB domain, and a beta-hairpin latch--that forms a circumferential clamp around nicked DNA. ChVLig provides an instructive model to understand the chemical and conformational steps of nick repair. Here we report the assignment of backbone (13)C, (15)N, (1)H(N) resonances of this 34.2 kDa protein, the first for a DNA ligase in full-length form.

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Year:  2009        PMID: 19636951      PMCID: PMC2746884          DOI: 10.1007/s12104-009-9145-9

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  9 in total

Review 1.  Eukaryotic DNA ligases: structural and functional insights.

Authors:  Tom Ellenberger; Alan E Tomkinson
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

2.  Mutational analysis of Chlorella virus DNA ligase: catalytic roles of domain I and motif VI.

Authors:  V Sriskanda; S Shuman
Journal:  Nucleic Acids Res       Date:  1998-10-15       Impact factor: 16.971

3.  Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining.

Authors:  M Odell; V Sriskanda; S Shuman; D B Nikolov
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Chlorella virus DNA ligase: nick recognition and mutational analysis.

Authors:  V Sriskanda; S Shuman
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

6.  Analysis of the DNA joining repertoire of Chlorella virus DNA ligase and a new crystal structure of the ligase-adenylate intermediate.

Authors:  Mark Odell; Lucy Malinina; Verl Sriskanda; Marianna Teplova; Stewart Shuman
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

7.  Footprinting of Chlorella virus DNA ligase bound at a nick in duplex DNA.

Authors:  M Odell; S Shuman
Journal:  J Biol Chem       Date:  1999-05-14       Impact factor: 5.157

8.  Structural basis for nick recognition by a minimal pluripotent DNA ligase.

Authors:  Pravin A Nair; Jayakrishnan Nandakumar; Paul Smith; Mark Odell; Christopher D Lima; Stewart Shuman
Journal:  Nat Struct Mol Biol       Date:  2007-07-08       Impact factor: 15.369

9.  TROSY in triple-resonance experiments: new perspectives for sequential NMR assignment of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205

  9 in total
  1 in total

1.  Solution NMR studies of Chlorella virus DNA ligase-adenylate.

Authors:  Andrea Piserchio; Pravin A Nair; Stewart Shuman; Ranajeet Ghose
Journal:  J Mol Biol       Date:  2009-11-11       Impact factor: 5.469

  1 in total

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