Literature DB >> 19636891

1H, 13C, and 15N resonance assignment of the ubiquitin-like domain from Dsk2p.

Tony Chen1, Daoning Zhang, Yulia Matiuhin, Michael Glickman, David Fushman.   

Abstract

The ubiquitin-like domain (UBL) of yeast protein Dsk2p is widely believed to recognize and bind to ubiquitin receptors on the proteasome and, as part of Dsk2p, to bridge polyubiquitinated substrates and proteasomal degradation machinery. Here we report NMR resonance assignment for (1)H, (15)N, and (13)C nuclei in the backbone and side chains of the UBL domain of Dsk2p. This assignment will aid in NMR studies focused on understanding of Dsk2's interactions with proteasomal receptors and its role as a polyubiquitin shuttle in the ubiquitin-dependent proteasomal degradation as well as other cellular pathways.

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Year:  2008        PMID: 19636891      PMCID: PMC2892233          DOI: 10.1007/s12104-008-9107-7

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  18 in total

1.  Proteins containing the UBA domain are able to bind to multi-ubiquitin chains.

Authors:  C R Wilkinson; M Seeger; R Hartmann-Petersen; M Stone; M Wallace; C Semple; C Gordon
Journal:  Nat Cell Biol       Date:  2001-10       Impact factor: 28.824

2.  Diverse polyubiquitin interaction properties of ubiquitin-associated domains.

Authors:  Shahri Raasi; Ranjani Varadan; David Fushman; Cecile M Pickart
Journal:  Nat Struct Mol Biol       Date:  2005-07-10       Impact factor: 15.369

3.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

4.  Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.

Authors:  Ayako Ohno; JunGoo Jee; Kenichiro Fujiwara; Takeshi Tenno; Natsuko Goda; Hidehito Tochio; Hideki Kobayashi; Hidekazu Hiroaki; Masahiro Shirakawa
Journal:  Structure       Date:  2005-04       Impact factor: 5.006

5.  Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain.

Authors:  Ranjani Varadan; Michael Assfalg; Shahri Raasi; Cecile Pickart; David Fushman
Journal:  Mol Cell       Date:  2005-06-10       Impact factor: 17.970

6.  Yeast Pth2 is a UBL domain-binding protein that participates in the ubiquitin-proteasome pathway.

Authors:  Takashi Ishii; Minoru Funakoshi; Hideki Kobayashi
Journal:  EMBO J       Date:  2006-11-02       Impact factor: 11.598

7.  Rad23 and Rpn10 serve as alternative ubiquitin receptors for the proteasome.

Authors:  Suzanne Elsasser; Devin Chandler-Militello; Britta Müller; John Hanna; Daniel Finley
Journal:  J Biol Chem       Date:  2004-04-26       Impact factor: 5.157

8.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

9.  A conditional yeast E1 mutant blocks the ubiquitin-proteasome pathway and reveals a role for ubiquitin conjugates in targeting Rad23 to the proteasome.

Authors:  Nazli Ghaboosi; Raymond J Deshaies
Journal:  Mol Biol Cell       Date:  2007-03-14       Impact factor: 4.138

10.  Yeast ubiquitin-like genes are involved in duplication of the microtubule organizing center.

Authors:  S Biggins; I Ivanovska; M D Rose
Journal:  J Cell Biol       Date:  1996-06       Impact factor: 10.539

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  2 in total

1.  Polyubiquitin-Photoactivatable Crosslinking Reagents for Mapping Ubiquitin Interactome Identify Rpn1 as a Proteasome Ubiquitin-Associating Subunit.

Authors:  Michal Chojnacki; Wissam Mansour; Dharjath S Hameed; Rajesh K Singh; Farid El Oualid; Rina Rosenzweig; Mark A Nakasone; Zanlin Yu; Fabian Glaser; Lewis E Kay; David Fushman; Huib Ovaa; Michael H Glickman
Journal:  Cell Chem Biol       Date:  2017-03-16       Impact factor: 8.116

2.  Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor.

Authors:  Daoning Zhang; Tony Chen; Inbal Ziv; Rina Rosenzweig; Yulia Matiuhin; Vered Bronner; Michael H Glickman; David Fushman
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

  2 in total

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