Literature DB >> 19633981

The dual role of autonomously replicating sequences as origins of replication and as silencers.

Muhammad Attiq Rehman1, Krassimir Yankulov.   

Abstract

Autonomously replicating sequences (ARSs) in Saccharomyces cerevisiae have been extensively characterized as both origins of DNA replication and as chromatin repressors/silencers. It has been conclusively shown that the origin and the silencer activities of ARS are substantially, but not entirely interchangeable and that they are modulated by position effects and chromatin environment. It remains unclear how these two quite divergent functions of ARS co-exist. This perspective focuses on recent advances, which have shown that slight differences in ARSs can modulate their affinity for origin recognition complex and their activity as silencers or origins.

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Year:  2009        PMID: 19633981     DOI: 10.1007/s00294-009-0265-7

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  45 in total

1.  Cohabitation of insulators and silencing elements in yeast subtelomeric regions.

Authors:  G Fourel; E Revardel; C E Koering; E Gilson
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

2.  Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms.

Authors:  V Q Nguyen; C Co; J J Li
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

3.  Mapping subunit location on the Saccharomyces cerevisiae origin recognition complex free and bound to DNA using a novel nanoscale biopointer.

Authors:  Paul D Chastain; Jayson L Bowers; Daniel G Lee; Stephen P Bell; Jack D Griffith
Journal:  J Biol Chem       Date:  2004-06-16       Impact factor: 5.157

4.  Subtelomeric ACS-containing proto-silencers act as antisilencers in replication factors mutants in Saccharomyces cerevisiae.

Authors:  Muhammad Attiq Rehman; Dongliang Wang; Genevieve Fourel; Eric Gilson; Krassimir Yankulov
Journal:  Mol Biol Cell       Date:  2008-11-12       Impact factor: 4.138

5.  Differential requirement of DNA replication factors for subtelomeric ARS consensus sequence protosilencers in Saccharomyces cerevisiae.

Authors:  Muhammad Attiq Rehman; Genevieve Fourel; Amit Mathews; Danielle Ramdin; Maria Espinosa; Eric Gilson; Krassimir Yankulov
Journal:  Genetics       Date:  2006-09-15       Impact factor: 4.562

6.  Roles for internal and flanking sequences in regulating the activity of mating-type-silencer-associated replication origins in Saccharomyces cerevisiae.

Authors:  K Sharma; M Weinberger; J A Huberman
Journal:  Genetics       Date:  2001-09       Impact factor: 4.562

7.  Replication dynamics of the yeast genome.

Authors:  M K Raghuraman; E A Winzeler; D Collingwood; S Hunt; L Wodicka; A Conway; D J Lockhart; R W Davis; B J Brewer; W L Fangman
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

8.  A synthetic silencer mediates SIR-dependent functions in Saccharomyces cerevisiae.

Authors:  F J McNally; J Rine
Journal:  Mol Cell Biol       Date:  1991-11       Impact factor: 4.272

9.  Differential DNA affinity specifies roles for the origin recognition complex in budding yeast heterochromatin.

Authors:  Madeleine A Palacios DeBeer; Ulrika Muller; Catherine A Fox
Journal:  Genes Dev       Date:  2003-08-01       Impact factor: 11.361

10.  A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication.

Authors:  C Santocanale; J F Diffley
Journal:  Nature       Date:  1998-10-08       Impact factor: 49.962

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  7 in total

1.  Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5.

Authors:  Joshua A Baller; Jiquan Gao; Daniel F Voytas
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-25       Impact factor: 11.205

Review 2.  Dbf4-Dependent Kinase: DDK-ated to post-initiation events in DNA replication.

Authors:  Andrew Dolson; Safia Mahabub Sauty; Kholoud Shaban; Krassimir Yankulov
Journal:  Cell Cycle       Date:  2021-10-18       Impact factor: 5.173

3.  Design of a minimal silencer for the silent mating-type locus HML of Saccharomyces cerevisiae.

Authors:  Jan M Weber; Ann E Ehrenhofer-Murray
Journal:  Nucleic Acids Res       Date:  2010-08-10       Impact factor: 16.971

4.  Sub-telomeric core X and Y' elements in S. cerevisiae suppress extreme variations in gene silencing.

Authors:  Patricia Power; Daniel Jeffery; Muhammad Attiq Rehman; Arjun Chatterji; Krassimir Yankulov
Journal:  PLoS One       Date:  2011-03-17       Impact factor: 3.240

5.  Modulation of telomeres in alternative lengthening of telomeres type I like human cells by the expression of werner protein and telomerase.

Authors:  Aisha Siddiqa; David Cavazos; Jeffery Chavez; Linda Long; Robert A Marciniak
Journal:  J Oncol       Date:  2012-03-28       Impact factor: 4.375

6.  Parasite epigenetics and immune evasion: lessons from budding yeast.

Authors:  Brandon A Wyse; Roxanne Oshidari; Daniel Cb Jeffery; Krassimir Y Yankulov
Journal:  Epigenetics Chromatin       Date:  2013-11-19       Impact factor: 4.954

7.  Directional telomeric silencing and lack of canonical B1 elements in two silencer Autonomously Replicating Sequences in S. cerevisiae.

Authors:  Patricia Chisamore-Robert; Samantha Peeters; Kristina Shostak; Krassimir Yankulov
Journal:  BMC Mol Biol       Date:  2012-11-16       Impact factor: 2.946

  7 in total

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