Literature DB >> 19632241

Functional mapping of human growth trajectories.

Ning Li1, Kiranmoy Das, Rongling Wu.   

Abstract

Human height is an important trait from biological and social perspectives. Genes have been widely recognized to be involved in human body growth, but their detailed controlling mechanisms are poorly understood. Here, we present a computational model for functional mapping of quantitative trait loci (QTLs) that control trajectories of human height growth through an interactive network. The model integrates mathematical equations of human growth curves into the mixture model-based functional mapping framework, allowing the identification and mapping of individual QTLs responsible for the developmental pattern of human growth. The model was derived on a random sample of subjects from a natural population, for each of which molecular markers within candidate genes or throughout the entire genome are typed and height data from childhood to adulthood are collected. A series of testable hypotheses are formulated about the genetic control of developmental timing and duration at different stages. The model was used to characterize epistatic QTLs for height growth hidden in 548 Japanese girls which is a semi-real data set with simulated the marker genotypes. With an increasing availability of genetic polymorphic data, the model will have great implications for probing the genetic and developmental mechanisms of human body growth and its associated diseases.

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Year:  2009        PMID: 19632241     DOI: 10.1016/j.jtbi.2009.07.020

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  10 in total

1.  Curve-based multivariate distance matrix regression analysis: application to genetic association analyses involving repeated measures.

Authors:  Rany M Salem; Daniel T O'Connor; Nicholas J Schork
Journal:  Physiol Genomics       Date:  2010-04-27       Impact factor: 3.107

2.  Gene-environment interactions on growth trajectories.

Authors:  Shuang Wang; Wei Xiong; Weiping Ma; Stephen Chanock; Wieslaw Jedrychowski; Rongling Wu; Frederica P Perera
Journal:  Genet Epidemiol       Date:  2012-02-06       Impact factor: 2.135

3.  How to cluster gene expression dynamics in response to environmental signals.

Authors:  Yaqun Wang; Meng Xu; Zhong Wang; Ming Tao; Junjia Zhu; Li Wang; Runze Li; Scott A Berceli; Rongling Wu
Journal:  Brief Bioinform       Date:  2011-07-10       Impact factor: 11.622

4.  The influence of parental effects on transcriptomic landscape during early development in brook charr (Salvelinus fontinalis, Mitchill).

Authors:  B Bougas; C Audet; L Bernatchez
Journal:  Heredity (Edinb)       Date:  2013-01-09       Impact factor: 3.821

5.  Linking transcriptomic and genomic variation to growth in brook charr hybrids (Salvelinus fontinalis, Mitchill).

Authors:  B Bougas; E Normandeau; C Audet; L Bernatchez
Journal:  Heredity (Edinb)       Date:  2013-01-16       Impact factor: 3.821

6.  Analyzing growth trajectories.

Authors:  I W McKeague; S López-Pintado; M Hallin; M Siman
Journal:  J Dev Orig Health Dis       Date:  2011-12       Impact factor: 2.401

7.  A maximum likelihood approach to functional mapping of longitudinal binary traits.

Authors:  Chenguang Wang; Hongying Li; Zhong Wang; Yaqun Wang; Ningtao Wang; Zuoheng Wang; Rongling Wu
Journal:  Stat Appl Genet Mol Biol       Date:  2012-11-22

Review 8.  Go with the flow-biology and genetics of the lactation cycle.

Authors:  Eva M Strucken; Yan C S M Laurenson; Gudrun A Brockmann
Journal:  Front Genet       Date:  2015-03-26       Impact factor: 4.599

9.  Funmap2: an R package for QTL mapping using longitudinal phenotypes.

Authors:  Nating Wang; Tinyi Chu; Jiangtao Luo; Rongling Wu; Zhong Wang
Journal:  PeerJ       Date:  2019-05-31       Impact factor: 2.984

10.  Genetic effects and correlations between production and fertility traits and their dependency on the lactation-stage in Holstein Friesians.

Authors:  Eva M Strucken; Ralf H Bortfeldt; Jens Tetens; Georg Thaller; Gudrun A Brockmann
Journal:  BMC Genet       Date:  2012-12-17       Impact factor: 2.797

  10 in total

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