Literature DB >> 19628383

Quantification of DNA and protein adsorption by optical phase shift.

Emre Ozkumur1, Ayça Yalçin, Marina Cretich, Carlos A Lopez, David A Bergstein, Bennett B Goldberg, Marcella Chiari, M Selim Unlü.   

Abstract

A primary advantage of label-free detection methods over fluorescent measurements is its quantitative detection capability, since an absolute measure of adsorbed material facilitates kinetic characterization of biomolecular interactions. Interferometric techniques relate the optical phase to biomolecular layer density on the surface, but the conversion factor has not previously been accurately determined. We present a calibration method for phase shift measurements and apply it to surface-bound bovine serum albumin, immunoglobulin G, and single-stranded DNA. Biomolecules with known concentrations dissolved in salt-free water were spotted with precise volumes on the array surface and upon evaporation of the water, left a readily calculated mass. Using our label-free technique, the calculated mass of the biolayer was compared with the measured thickness, and we observed a linear dependence over 4 orders of magnitude. We determined that the widely accepted conversion of 1 nm of thickness corresponds to approximately 1 ng/mm(2) surface density held reasonably well for these substances and through our experiments can now be further specified for different types of biomolecules. Through accurate calibration of the dependence of thickness on surface density, we have established a relation allowing precise determination of the absolute number of molecules for single-stranded DNA and two different proteins.

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Year:  2009        PMID: 19628383      PMCID: PMC2750076          DOI: 10.1016/j.bios.2009.06.033

Source DB:  PubMed          Journal:  Biosens Bioelectron        ISSN: 0956-5663            Impact factor:   10.618


  25 in total

1.  A perspective on protein microarrays.

Authors:  Peter Mitchell
Journal:  Nat Biotechnol       Date:  2002-03       Impact factor: 54.908

2.  Printing proteins as microarrays for high-throughput function determination.

Authors:  G MacBeath; S L Schreiber
Journal:  Science       Date:  2000-09-08       Impact factor: 47.728

Review 3.  Optical biosensors in drug discovery.

Authors:  Matthew A Cooper
Journal:  Nat Rev Drug Discov       Date:  2002-07       Impact factor: 84.694

4.  Photobleaching kinetics of fluorescein in quantitative fluorescence microscopy.

Authors:  L Song; E J Hennink; I T Young; H J Tanke
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

5.  Global analysis of protein activities using proteome chips.

Authors:  H Zhu; M Bilgin; R Bangham; D Hall; A Casamayor; P Bertone; N Lan; R Jansen; S Bidlingmaier; T Houfek; T Mitchell; P Miller; R A Dean; M Gerstein; M Snyder
Journal:  Science       Date:  2001-07-26       Impact factor: 47.728

6.  Sequence-dependent DNA immobilization: specific versus nonspecific contributions.

Authors:  Lauren K Wolf; Yang Gao; Rosina M Georgiadis
Journal:  Langmuir       Date:  2004-04-13       Impact factor: 3.882

7.  The density and refractive index of adsorbing protein layers.

Authors:  Janos Vörös
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

8.  A biofunctional polymeric coating for microcantilever molecular recognition.

Authors:  Giulio Oliviero; Paolo Bergese; Giancarlo Canavese; Marcella Chiari; Paolo Colombi; Marina Cretich; Francesco Damin; Sonia Fiorilli; Simone L Marasso; Carlo Ricciardi; Paola Rivolo; Laura E Depero
Journal:  Anal Chim Acta       Date:  2008-10-17       Impact factor: 6.558

9.  Characterization of a polymeric adsorbed coating for DNA microarray glass slides.

Authors:  Giovanna Pirri; Francesco Damin; Marcella Chiari; Elza Bontempi; Laura E Depero
Journal:  Anal Chem       Date:  2004-03-01       Impact factor: 6.986

10.  Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions.

Authors:  B B Haab; M J Dunham; P O Brown
Journal:  Genome Biol       Date:  2001-01-22       Impact factor: 13.583

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  20 in total

1.  Validation of arrayed imaging reflectometry biosensor response for protein-antibody interactions: cross-correlation of theory, experiment, and complementary techniques.

Authors:  Rashmi Sriram; Amrita R Yadav; Charles R Mace; Benjamin L Miller
Journal:  Anal Chem       Date:  2011-04-25       Impact factor: 6.986

2.  Multiplexed method to calibrate and quantitate fluorescence signal for allergen-specific IgE.

Authors:  Margo R Monroe; Alexander P Reddington; Austin D Collins; Craig LaBoda; Marina Cretich; Marcella Chiari; Frédéric F Little; M Selim Unlü
Journal:  Anal Chem       Date:  2011-11-22       Impact factor: 6.986

Review 3.  Interferometric methods for label-free molecular interaction studies.

Authors:  Amanda Kussrow; Carolyn S Enders; Darryl J Bornhop
Journal:  Anal Chem       Date:  2011-11-07       Impact factor: 6.986

4.  Integrated imaging instrument for self-calibrated fluorescence protein microarrays.

Authors:  A P Reddington; M R Monroe; M S Ünlü
Journal:  Rev Sci Instrum       Date:  2013-10       Impact factor: 1.523

5.  Silicon biochips for dual label-free and fluorescence detection: Application to protein microarray development.

Authors:  Marina Cretich; Alex Reddington; Margo Monroe; Marta Bagnati; Francesco Damin; Laura Sola; M Selim Unlu; Marcella Chiari
Journal:  Biosens Bioelectron       Date:  2011-04-09       Impact factor: 10.618

6.  Label-free multiplexed virus detection using spectral reflectance imaging.

Authors:  Carlos A Lopez; George G Daaboul; Rahul S Vedula; Emre Ozkumur; David A Bergstein; Thomas W Geisbert; Helen E Fawcett; Bennett B Goldberg; John H Connor; M Selim Unlü
Journal:  Biosens Bioelectron       Date:  2011-01-22       Impact factor: 10.618

7.  Synergetic chemiluminescence and label-free dual detection for developing a hepatitis protein array.

Authors:  C Pereira; A Yalçın; M Cretich; M Chiari; M S Unlü; D Nunes; D A Bergstein
Journal:  J Immunol Methods       Date:  2011-06-22       Impact factor: 2.303

8.  TATA binding proteins can recognize nontraditional DNA sequences.

Authors:  Sunmin Ahn; Chia-Ling Huang; Emre Ozkumur; Xirui Zhang; Jyothsna Chinnala; Ayca Yalcin; Sabita Bandyopadhyay; Shelly Russek; M Selim Unlü; Charles DeLisi; Rostem J Irani
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

9.  Mass-transport limitations in spot-based microarrays.

Authors:  Ming Zhao; Xuefeng Wang; David Nolte
Journal:  Biomed Opt Express       Date:  2010-09-20       Impact factor: 3.732

10.  Label-free microarray imaging for direct detection of DNA hybridization and single-nucleotide mismatches.

Authors:  Emre Ozkumur; Sunmin Ahn; Ayça Yalçin; Carlos A Lopez; Elif Cevik; Rostem J Irani; Charles DeLisi; Marcella Chiari; M Selim Unlü
Journal:  Biosens Bioelectron       Date:  2010-01-04       Impact factor: 10.618

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