Literature DB >> 19627979

Application of the Van Slyke-Cullen irreversible mechanism in the analysis of enzymatic progress curves.

Petr Kuzmic1.   

Abstract

For enzymatic progress curves conforming to the Michaelis-Menten mechanism E+Sright harpoon over left harpoonES-->E+P, the minimal fitting model cast as a system of numerically integrated differential equations is the simplified, irreversible Van Slyke-Cullen mechanism E+S-->ES-->E+P. The best-fit value of the bimolecular association rate constant is identical to the specificity constant kcat/KM. An illustrative example involves a fluorogenic continuous assay of the HIV protease, analyzed by the differential-equation oriented software package DYNAFIT [P. Kuzmic, Anal. Biochem. 237 (1996) 260].

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Year:  2009        PMID: 19627979     DOI: 10.1016/j.ab.2009.06.040

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  12 in total

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2.  Precisely ordered phosphorylation reactions in the p38 mitogen-activated protein (MAP) kinase cascade.

Authors:  John M Humphreys; Alexander T Piala; Radha Akella; Haixia He; Elizabeth J Goldsmith
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3.  Inhibition of Excision of Oxidatively Generated Hydantoin DNA Lesions by NEIL1 by the Competitive Binding of the Nucleotide Excision Repair Factor XPC-RAD23B.

Authors:  Marina Kolbanovskiy; Yoonjung Shim; Jung-Hyun Min; Nicholas E Geacintov; Vladimir Shafirovich
Journal:  Biochemistry       Date:  2020-04-21       Impact factor: 3.162

4.  Full length and protease domain activity of chikungunya virus nsP2 differ from other alphavirus nsP2 proteases in recognition of small peptide substrates.

Authors:  Chonticha Saisawang; Pornpan Sillapee; Kwanhathai Sinsirimongkol; Sukathida Ubol; Duncan R Smith; Albert J Ketterman
Journal:  Biosci Rep       Date:  2015-04-22       Impact factor: 3.840

5.  Serum Albumin Binding and Esterase Activity: Mechanistic Interactions with Organophosphates.

Authors:  Nikolay V Goncharov; Daria A Belinskaia; Vladimir I Shmurak; Maxim A Terpilowski; Richard O Jenkins; Pavel V Avdonin
Journal:  Molecules       Date:  2017-07-18       Impact factor: 4.411

6.  Rapid Mechanistic Evaluation and Parameter Estimation of Putative Inhibitors in a Single-Step Progress-Curve Analysis: The Case of Horse Butyrylcholinesterase.

Authors:  Jure Stojan
Journal:  Molecules       Date:  2017-07-26       Impact factor: 4.411

7.  Development of potent reversible selective inhibitors of butyrylcholinesterase as fluorescent probes.

Authors:  Stane Pajk; Damijan Knez; Urban Košak; Maja Zorović; Xavier Brazzolotto; Nicolas Coquelle; Florian Nachon; Jacques-Philippe Colletier; Marko Živin; Jure Stojan; Stanislav Gobec
Journal:  J Enzyme Inhib Med Chem       Date:  2020-12       Impact factor: 5.051

8.  Probing the Dynamic Structure-Function and Structure-Free Energy Relationships of the Coronavirus Main Protease with Biodynamics Theory.

Authors:  Hongbin Wan; Vibhas Aravamuthan; Robert A Pearlstein
Journal:  ACS Pharmacol Transl Sci       Date:  2020-11-06

Review 9.  Excision of Oxidatively Generated Guanine Lesions by Competitive DNA Repair Pathways.

Authors:  Vladimir Shafirovich; Nicholas E Geacintov
Journal:  Int J Mol Sci       Date:  2021-03-07       Impact factor: 5.923

10.  Enzyme kinetic and binding studies identify determinants of specificity for the immunomodulatory enzyme ScpA, a C5a inactivating bacterial protease.

Authors:  Malgorzata Teçza; Todd F Kagawa; Monica Jain; Jakki C Cooney
Journal:  Comput Struct Biotechnol J       Date:  2021-04-17       Impact factor: 7.271

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