Literature DB >> 19626045

Breaking the chains: structure and function of the deubiquitinases.

David Komander1, Michael J Clague, Sylvie Urbé.   

Abstract

Ubiquitylation is a reversible protein modification that is implicated in many cellular functions. Recently, much progress has been made in the characterization of a superfamily of isopeptidases that remove ubiquitin: the deubiquitinases (DUBs; also known as deubiquitylating or deubiquitinating enzymes). Far from being uniform in structure and function, these enzymes display a myriad of distinct mechanistic features. The small number (<100) of DUBs might at first suggest a low degree of selectivity; however, DUBs are subject to multiple layers of regulation that modulate both their activity and their specificity. Due to their wide-ranging involvement in key regulatory processes, these enzymes might provide new therapeutic targets.

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Year:  2009        PMID: 19626045     DOI: 10.1038/nrm2731

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  136 in total

1.  The deubiquitinating enzyme USP1 regulates the Fanconi anemia pathway.

Authors:  Sebastian M B Nijman; Tony T Huang; Annette M G Dirac; Thijn R Brummelkamp; Ron M Kerkhoven; Alan D D'Andrea; René Bernards
Journal:  Mol Cell       Date:  2005-02-04       Impact factor: 17.970

2.  Deubiquitinating function of ataxin-3: insights from the solution structure of the Josephin domain.

Authors:  Yuxin Mao; Francesca Senic-Matuglia; Pier Paolo Di Fiore; Simona Polo; Michael E Hodsdon; Pietro De Camilli
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-23       Impact factor: 11.205

3.  The ubiquitin-modifying enzyme A20 is required for termination of Toll-like receptor responses.

Authors:  David L Boone; Emre E Turer; Eric G Lee; Regina-Celeste Ahmad; Matthew T Wheeler; Colleen Tsui; Paula Hurley; Marcia Chien; Sophia Chai; Osamu Hitotsumatsu; Elizabeth McNally; Cecile Pickart; Averil Ma
Journal:  Nat Immunol       Date:  2004-08-29       Impact factor: 25.606

Review 4.  Ubiquitin in NF-kappaB signaling.

Authors:  Yu-Hsin Chiu; Meng Zhao; Zhijian J Chen
Journal:  Chem Rev       Date:  2009-04       Impact factor: 60.622

5.  Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry.

Authors:  David Meierhofer; Xiaorong Wang; Lan Huang; Peter Kaiser
Journal:  J Proteome Res       Date:  2008-09-10       Impact factor: 4.466

6.  Josephin domain of ataxin-3 contains two distinct ubiquitin-binding sites.

Authors:  Giuseppe Nicastro; Laura Masino; Veronica Esposito; Rajesh P Menon; Alfonso De Simone; Franca Fraternali; Annalisa Pastore
Journal:  Biopolymers       Date:  2009-12       Impact factor: 2.505

7.  Structure of the A20 OTU domain and mechanistic insights into deubiquitination.

Authors:  David Komander; David Barford
Journal:  Biochem J       Date:  2008-01-01       Impact factor: 3.857

8.  A histone H2A deubiquitinase complex coordinating histone acetylation and H1 dissociation in transcriptional regulation.

Authors:  Ping Zhu; Wenlai Zhou; Jianxun Wang; Janusz Puc; Kenneth A Ohgi; Hediye Erdjument-Bromage; Paul Tempst; Christopher K Glass; Michael G Rosenfeld
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

9.  Control of AMPK-related kinases by USP9X and atypical Lys(29)/Lys(33)-linked polyubiquitin chains.

Authors:  Abdallah K Al-Hakim; Anna Zagorska; Louise Chapman; Maria Deak; Mark Peggie; Dario R Alessi
Journal:  Biochem J       Date:  2008-04-15       Impact factor: 3.857

10.  The solution structure of the Josephin domain of ataxin-3: structural determinants for molecular recognition.

Authors:  Giuseppe Nicastro; Rajesh P Menon; Laura Masino; Philip P Knowles; Neil Q McDonald; Annalisa Pastore
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-14       Impact factor: 11.205

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  847 in total

1.  Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin.

Authors:  Daniel Burschowsky; Fabian Rudolf; Gwénaël Rabut; Torsten Herrmann; Matthias Peter; Peter Matthias; Gerhard Wider
Journal:  J Biol Chem       Date:  2010-10-06       Impact factor: 5.157

2.  Control of B cell development by the histone H2A deubiquitinase MYSM1.

Authors:  Xiao-Xia Jiang; Quan Nguyen; YuChia Chou; Tao Wang; Vijayalakshmi Nandakumar; Peter Yates; Lindsey Jones; Lifeng Wang; Haejung Won; Hye-Ra Lee; Jae U Jung; Markus Müschen; Xue F Huang; Si-Yi Chen
Journal:  Immunity       Date:  2011-12-08       Impact factor: 31.745

3.  Protein-linked ubiquitin chain structure restricts activity of deubiquitinating enzymes.

Authors:  Jonathan B Schaefer; David O Morgan
Journal:  J Biol Chem       Date:  2011-11-09       Impact factor: 5.157

Review 4.  Ubiquitin and proteasomes in transcription.

Authors:  Fuqiang Geng; Sabine Wenzel; William P Tansey
Journal:  Annu Rev Biochem       Date:  2012-03-08       Impact factor: 23.643

Review 5.  Shaping development with ESCRTs.

Authors:  Tor Erik Rusten; Thomas Vaccari; Harald Stenmark
Journal:  Nat Cell Biol       Date:  2011-12-22       Impact factor: 28.824

Review 6.  Trojan horse strategies used by pathogens to influence the small ubiquitin-like modifier (SUMO) system of host eukaryotic cells.

Authors:  Miklós Békés; Marcin Drag
Journal:  J Innate Immun       Date:  2012-01-03       Impact factor: 7.349

7.  Regulation of p53 stability and function by the deubiquitinating enzyme USP42.

Authors:  Andreas K Hock; Arnaud M Vigneron; Stephanie Carter; Robert L Ludwig; Karen H Vousden
Journal:  EMBO J       Date:  2011-11-15       Impact factor: 11.598

Review 8.  Regulation of Parkin E3 ubiquitin ligase activity.

Authors:  Helen Walden; R Julio Martinez-Torres
Journal:  Cell Mol Life Sci       Date:  2012-04-19       Impact factor: 9.261

Review 9.  Ubiquitous points of control over regulatory T cells.

Authors:  Fan Pan; Joseph Barbi
Journal:  J Mol Med (Berl)       Date:  2014-04-29       Impact factor: 4.599

Review 10.  Ubiquitin-proteasome signaling in lung injury.

Authors:  Natalia D Magnani; Laura A Dada; Jacob I Sznajder
Journal:  Transl Res       Date:  2018-04-23       Impact factor: 7.012

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