Literature DB >> 19620020

The phosphoproteomics data explosion.

Simone Lemeer1, Albert J R Heck.   

Abstract

There are likely more than 500000 potential phosphorylation sites in a cellular proteome. This dynamic phosphorylation is under tight control of a variety of kinases and phosphatases. In recent years significant progress has been made in the large-scale analysis of these in vitro and in vivo protein phosphorylation events. Much of this data have been deposited in public depositories, which have described so far about 25000 phosphorylation sites on about 7000 human proteins. However, the amount of phosphoproteomics data generated is now growing tremendously at a rate of about 10000 sites per reported study. The major advances made in global phosphoproteomics analyses originate from technological advances, whereby the largest contributions are from more selective phosphopeptide affinity enrichment technologies and from faster, and more sensitive mass spectrometers.

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Year:  2009        PMID: 19620020     DOI: 10.1016/j.cbpa.2009.06.022

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  56 in total

1.  Comprehensive and reproducible phosphopeptide enrichment using iron immobilized metal ion affinity chromatography (Fe-IMAC) columns.

Authors:  Benjamin Ruprecht; Heiner Koch; Guillaume Medard; Max Mundt; Bernhard Kuster; Simone Lemeer
Journal:  Mol Cell Proteomics       Date:  2014-11-13       Impact factor: 5.911

2.  Quantitative proteomics analysis of phosphorylated proteins in the hippocampus of Alzheimer's disease subjects.

Authors:  Fabio Di Domenico; Rukhsana Sultana; Eugenio Barone; Marzia Perluigi; Chiara Cini; Cesare Mancuso; Jian Cai; William M Pierce; D Allan Butterfield
Journal:  J Proteomics       Date:  2011-04-13       Impact factor: 4.044

3.  Rampant purifying selection conserves positions with posttranslational modifications in human proteins.

Authors:  Vanessa E Gray; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-01-27       Impact factor: 16.240

Review 4.  Next-generation proteomics: towards an integrative view of proteome dynamics.

Authors:  A F Maarten Altelaar; Javier Munoz; Albert J R Heck
Journal:  Nat Rev Genet       Date:  2012-12-04       Impact factor: 53.242

5.  Proteomics meets the scientific method.

Authors:  Paola Picotti; Bernd Bodenmiller; Ruedi Aebersold
Journal:  Nat Methods       Date:  2013-01       Impact factor: 28.547

6.  A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics.

Authors:  Harald Marx; Simone Lemeer; Jan Erik Schliep; Lucrece Matheron; Shabaz Mohammed; Jürgen Cox; Matthias Mann; Albert J R Heck; Bernhard Kuster
Journal:  Nat Biotechnol       Date:  2013-05-19       Impact factor: 54.908

7.  A phosphotyrosine switch for cargo sequestration at clathrin-coated buds.

Authors:  Souvik Chakraborty; Perunthottathu K Umasankar; G Michael Preston; Puneet Khandelwal; Gerard Apodaca; Simon C Watkins; Linton M Traub
Journal:  J Biol Chem       Date:  2014-05-05       Impact factor: 5.157

8.  Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs.

Authors:  Klaas J van Wijk; Giulia Friso; Dirk Walther; Waltraud X Schulze
Journal:  Plant Cell       Date:  2014-06-03       Impact factor: 11.277

9.  Over 2300 phosphorylated peptide identifications with single-shot capillary zone electrophoresis-tandem mass spectrometry in a 100 min separation.

Authors:  Katelyn R Ludwig; Liangliang Sun; Guijie Zhu; Norman J Dovichi; Amanda B Hummon
Journal:  Anal Chem       Date:  2015-10-06       Impact factor: 6.986

10.  Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth.

Authors:  Hongtao Zhang; Houjiang Zhou; Lidija Berke; Albert J R Heck; Shabaz Mohammed; Ben Scheres; Frank L H Menke
Journal:  Mol Cell Proteomics       Date:  2013-01-17       Impact factor: 5.911

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