| Literature DB >> 19617354 |
Richard P O Jones1, Ming-Chuan Wang, Thomas A Jowitt, Caroline Ridley, Kieran T Mellody, Marjorie Howard, Tao Wang, Paul N Bishop, Andrew J Lotery, Cay M Kielty, Clair Baldock, Dorothy Trump.
Abstract
Fibulin 5 is a 52-kDa calcium-binding epidermal growth factor (cbEGF)-rich extracellular matrix protein that is essential for the formation of elastic tissues. Missense mutations in fibulin 5 cause the elastin disorder cutis laxa and have been associated with age-related macular degeneration, a leading cause of blindness. We investigated the structure, hydrodynamics, and oligomerization of fibulin 5 using small angle x-ray scattering, EM, light scattering, circular dichroism, and sedimentation. Compact structures for the monomer were determined by small angle x-ray scattering and EM, and are supported by close agreement between the theoretical sedimentation of the structures and the experimental sedimentation of the monomer in solution. EM showed that monomers associate around a central cavity to form a dimer. Light scattering and equilibrium sedimentation demonstrated that the equilibrium between the monomer and the dimer is dependent upon NaCl and Ca2+ concentrations and that the dimer is dominant under physiological conditions. The dimerization of fragments containing just the cbEGF domains suggests that intermolecular interactions between cbEGFs cause dimerization of fibulin 5. It is possible that fibulin 5 functions as a dimer during elastinogenesis or that dimerization may provide a method for limiting interactions with binding partners such as tropoelastin.Entities:
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Year: 2009 PMID: 19617354 PMCID: PMC2757994 DOI: 10.1074/jbc.M109.011627
Source DB: PubMed Journal: J Biol Chem ISSN: 0021-9258 Impact factor: 5.157
Hydrodynamic parameters for full-length fibulin 5 monomers, dimers, and HOOs were determined from the analysis of solution (sol)(MALLS, AUC, and SAXS) and EM data as indicated
Dmax is the maximum dimension. The means and standard errors shown were calculated from results for three batches of protein.
| Ca2+ | Fibulin 5 oligomer | Mass | |||||
|---|---|---|---|---|---|---|---|
| Absent | solmonomer | 51.6 ± 0.4 | 1.46 ± 0.05 | 1.48 ± 0.01 | 3.73 ± 0.02 | 3.61 ± 0.02 | |
| SAXSmonomer | 51.6 | 3.80 | 3.54 | 13 | |||
| EMmonomer | 3.79 | 3.55 | 10 | ||||
| Present | solmonomer | 51.6 | 1.55 ± 0.07 | 3.6 ± 0.2 | 3.8 ± 0.2 | ||
| soldimer | 103.2 | 1.3 ± 0.1 | 1.64 ± 0.07 | 5.3 ± 0.2 | 5.0 ± 0.2 | ||
| EMdimer | 5.31 | 5.07 | 15 | ||||
| solHOOs | 200–1000 | ||||||
| <1000 | 1.48 |
Sedfit (39) determined the best fit for mass-independent frictional ratio f/f0.
Sednterp (37) used the MALLS-derived mass and the S values for c(s) maxima to calculate f/f0, standard sedimentation coefficient s20, and hydrodynamic radius R.
Mass was derived from MALLS.
Mass was calculated from the MALLS-derived mass of the monomer.
Hydropro (43) calculated theoretical standard hydrodynamic parameters for the SAXS monomer structure.
Hydromic (42) calculated theoretical standard hydrodynamic parameters for the EM structures.
Mass range was estimated from the c(M) distribution (S7B), which depends upon f/f0.
FIGURE 1.CD, SEC-MALLS, and velocity sedimentation for full-length fibulin 5. A, mean CD spectra for three batches of fibulin 5 purified by SEC in each buffer. B and C, chromatograms show the dependence of the differential refractive index (DRI) upon [NaCl] and [Ca2+]. The DRI was normalized to 1.0 for each peak maximum; the column void positions were co-registered at 8 ml. B, first applications of fibulin 5 to the SEC. C, selected fractions were reapplied to SEC-MALLS to determine molar masses. D, sedimentation of SEC-purified fractions of fibulin 5 in the absence (red line, monomer) and presence (black line, mainly dimer) of Ca2+. c(s) size distributions were calculated by Sedfit (39).
FIGURE 2.Equilibrium sedimentation of full-length fibulin 5. A, in the absence of Ca2+ equilibrium sedimentation established the [NaCl] dependence of the dimer dissociation constant K and the ratio AM/MM. B, [Ca2+] dependence of K and AM/MM was determined for fibulin 5 in 150 mm NaCl. Data were analyzed by global nonlinear regression within Sedphat (40): Each error bar was determined by 100 Monte-Carlo simulations of the experimental data.
FIGURE 3.Structures of the fibulin 5 monomer in the absence of Ca A, selected representative class averages from EM single-particle image processing comparable with B, orthogonal views of the volume-rendered EM three-dimensional reconstructions. Thresholds were determined by matching theoretical standard hydrodynamic parameters calculated by Hydromic (42) for the reconstructions with experimentally measured parameters (Table 1). C, a “most probable” SAXS model for fibulin 5 is shown as touching spheres in orthogonal orientations.