Literature DB >> 19616623

Constraint satisfaction problems and neural networks: A statistical physics perspective.

Marc Mézard1, Thierry Mora.   

Abstract

A new field of research is rapidly expanding at the crossroad between statistical physics, information theory and combinatorial optimization. In particular, the use of cutting edge statistical physics concepts and methods allow one to solve very large constraint satisfaction problems like random satisfiability, coloring, or error correction. Several aspects of these developments should be relevant for the understanding of functional complexity in neural networks. On the one hand the message passing procedures which are used in these new algorithms are based on local exchange of information, and succeed in solving some of the hardest computational problems. On the other hand some crucial inference problems in neurobiology, like those generated in multi-electrode recordings, naturally translate into hard constraint satisfaction problems. This paper gives a non-technical introduction to this field, emphasizing the main ideas at work in message passing strategies and their possible relevance to neural networks modelling. It also introduces a new message passing algorithm for inferring interactions between variables from correlation data, which could be useful in the analysis of multi-electrode recording data.

Mesh:

Year:  2009        PMID: 19616623     DOI: 10.1016/j.jphysparis.2009.05.013

Source DB:  PubMed          Journal:  J Physiol Paris        ISSN: 0928-4257


  19 in total

1.  Identification of direct residue contacts in protein-protein interaction by message passing.

Authors:  Martin Weigt; Robert A White; Hendrik Szurmant; James A Hoch; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-30       Impact factor: 11.205

Review 2.  Searching for simplicity in the analysis of neurons and behavior.

Authors:  Greg J Stephens; Leslie C Osborne; William Bialek
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

Review 3.  Frustration in biomolecules.

Authors:  Diego U Ferreiro; Elizabeth A Komives; Peter G Wolynes
Journal:  Q Rev Biophys       Date:  2014-09-16       Impact factor: 5.318

4.  Structural propensities of kinase family proteins from a Potts model of residue co-variation.

Authors:  Allan Haldane; William F Flynn; Peng He; R S K Vijayan; Ronald M Levy
Journal:  Protein Sci       Date:  2016-06-26       Impact factor: 6.725

Review 5.  Potts Hamiltonian models of protein co-variation, free energy landscapes, and evolutionary fitness.

Authors:  Ronald M Levy; Allan Haldane; William F Flynn
Journal:  Curr Opin Struct Biol       Date:  2016-11-18       Impact factor: 6.809

6.  Solving Constraint-Satisfaction Problems with Distributed Neocortical-Like Neuronal Networks.

Authors:  Ueli Rutishauser; Jean-Jacques Slotine; Rodney J Douglas
Journal:  Neural Comput       Date:  2018-03-22       Impact factor: 2.026

7.  Epistasis and entrenchment of drug resistance in HIV-1 subtype B.

Authors:  Avik Biswas; Allan Haldane; Eddy Arnold; Ronald M Levy
Journal:  Elife       Date:  2019-10-08       Impact factor: 8.140

8.  Statistical physics of pairwise probability models.

Authors:  Yasser Roudi; Erik Aurell; John A Hertz
Journal:  Front Comput Neurosci       Date:  2009-11-17       Impact factor: 2.380

9.  Missing mass approximations for the partition function of stimulus driven Ising models.

Authors:  Robert Haslinger; Demba Ba; Ralf Galuske; Ziv Williams; Gordon Pipa
Journal:  Front Comput Neurosci       Date:  2013-07-24       Impact factor: 2.380

10.  Mi3-GPU: MCMC-based Inverse Ising Inference on GPUs for protein covariation analysis.

Authors:  Allan Haldane; Ronald M Levy
Journal:  Comput Phys Commun       Date:  2020-04-17       Impact factor: 4.390

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