Literature DB >> 19610125

Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations.

Yinjie J Tang1, Hector Garcia Martin, Adam Deutschbauer, Xueyang Feng, Rick Huang, Xavier Llora, Adam Arkin, Jay D Keasling.   

Abstract

An environmentally important bacterium with versatile respiration, Shewanella oneidensis MR-1, displayed significantly different growth rates under three culture conditions: minimal medium (doubling time approximately 3 h), salt stressed minimal medium (doubling time approximately 6 h), and minimal medium with amino acid supplementation (doubling time approximately 1.5 h). (13)C-based metabolic flux analysis indicated that fluxes of central metabolic reactions remained relatively constant under the three growth conditions, which is in stark contrast to the reported significant changes in the transcript and metabolite profiles under various growth conditions. Furthermore, 10 transposon mutants of S. oneidensis MR-1 were randomly chosen from a transposon library and their flux distributions through central metabolic pathways were revealed to be identical, even though such mutational processes altered the secondary metabolism, for example, glycine and C1 (5,10-Me-THF) metabolism. 2009 American Institute of Chemical Engineers Biotechnol.

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Year:  2009        PMID: 19610125     DOI: 10.1002/btpr.227

Source DB:  PubMed          Journal:  Biotechnol Prog        ISSN: 1520-6033


  8 in total

1.  Metabolic pathway confirmation and discovery through (13)C-labeling of proteinogenic amino acids.

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Journal:  J Vis Exp       Date:  2012-01-26       Impact factor: 1.355

2.  Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity.

Authors:  Sarah-Maria Fendt; Joerg Martin Buescher; Florian Rudroff; Paola Picotti; Nicola Zamboni; Uwe Sauer
Journal:  Mol Syst Biol       Date:  2010-04-13       Impact factor: 11.429

3.  The tricarboxylic acid cycle in Shewanella oneidensis is independent of Fur and RyhB control.

Authors:  Yunfeng Yang; Lee Ann McCue; Andrea B Parsons; Sheng Feng; Jizhong Zhou
Journal:  BMC Microbiol       Date:  2010-10-16       Impact factor: 3.605

Review 4.  Bridging the gap between fluxomics and industrial biotechnology.

Authors:  Xueyang Feng; Lawrence Page; Jacob Rubens; Lauren Chircus; Peter Colletti; Himadri B Pakrasi; Yinjie J Tang
Journal:  J Biomed Biotechnol       Date:  2011-01-02

5.  ¹³C Pathway Analysis for the Role of Formate in Electricity Generation by Shewanella Oneidensis MR-1 Using Lactate in Microbial Fuel Cells.

Authors:  Shuai Luo; Weihua Guo; Kenneth H Nealson; Xueyang Feng; Zhen He
Journal:  Sci Rep       Date:  2016-02-12       Impact factor: 4.379

6.  Bacterial Metabolism During Biofilm Growth Investigated by 13C Tracing.

Authors:  Ni Wan; Hao Wang; Chun Kiat Ng; Manisha Mukherjee; Dacheng Ren; Bin Cao; Yinjie J Tang
Journal:  Front Microbiol       Date:  2018-11-20       Impact factor: 5.640

7.  Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities.

Authors:  Hyun-Seob Song; Ryan S Renslow; Jim K Fredrickson; Stephen R Lindemann
Journal:  Front Microbiol       Date:  2015-12-01       Impact factor: 5.640

8.  Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming.

Authors:  Stephen Gang Wu; Yuxuan Wang; Wu Jiang; Tolutola Oyetunde; Ruilian Yao; Xuehong Zhang; Kazuyuki Shimizu; Yinjie J Tang; Forrest Sheng Bao
Journal:  PLoS Comput Biol       Date:  2016-04-19       Impact factor: 4.475

  8 in total

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