Literature DB >> 19609769

Detecting apoptotic cells and monitoring their clearance in the nematode Caenorhabditis elegans.

Nan Lu1, Xiaomeng Yu, Xiangwei He, Zheng Zhou.   

Abstract

Apoptosis is a genetically controlled process of cell suicide that plays an important role in animal development and in maintaining homeostasis. The nematode Caenorhabditis elegans has proven to be an excellent model organism for studying the mechanisms controlling apoptosis and the subsequent clearance of apoptotic cells, aided with cell-biological and genetic tools. In particular, the transparent nature of worm bodies and eggshells makes C. elegans particularly amiable for live cell microscopy. Here we describe a few methods for identifying apoptotic cells in living C. elegans embryos and adults and for monitoring their clearance during embryonic development. These methods are based on Differential Interference Contrast microscopy and on fluorescence microscopy using GFP-based reporters.

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Year:  2009        PMID: 19609769      PMCID: PMC2901927          DOI: 10.1007/978-1-60327-017-5_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  23 in total

Review 1.  The genetics of hiding the corpse: engulfment and degradation of apoptotic cells in C. elegans and D. melanogaster.

Authors:  Zheng Zhou; Paolo M Mangahas; Xiaomeng Yu
Journal:  Curr Top Dev Biol       Date:  2004       Impact factor: 4.897

Review 2.  Deconvolution microscopy.

Authors:  Jean-Baptiste Sibarita
Journal:  Adv Biochem Eng Biotechnol       Date:  2005       Impact factor: 2.635

3.  Two alternative mechanisms that regulate the presentation of apoptotic cell engulfment signal in Caenorhabditis elegans.

Authors:  Victor Venegas; Zheng Zhou
Journal:  Mol Biol Cell       Date:  2007-06-13       Impact factor: 4.138

4.  C. elegans mitochondrial factor WAH-1 promotes phosphatidylserine externalization in apoptotic cells through phospholipid scramblase SCRM-1.

Authors:  Xiaochen Wang; Jin Wang; Keiko Gengyo-Ando; Lichuan Gu; Chun-Ling Sun; Chonglin Yang; Yong Shi; Tetsuo Kobayashi; Yigong Shi; Shohei Mitani; Xiao-Song Xie; Ding Xue
Journal:  Nat Cell Biol       Date:  2007-04-01       Impact factor: 28.824

5.  A protocol describing pharynx counts and a review of other assays of apoptotic cell death in the nematode worm Caenorhabditis elegans.

Authors:  Hillel T Schwartz
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

6.  C. elegans Dynamin mediates the signaling of phagocytic receptor CED-1 for the engulfment and degradation of apoptotic cells.

Authors:  Xiaomeng Yu; Sampeter Odera; Chin-Hua Chuang; Nan Lu; Zheng Zhou
Journal:  Dev Cell       Date:  2006-06       Impact factor: 12.270

7.  Aminophospholipid translocase TAT-1 promotes phosphatidylserine exposure during C. elegans apoptosis.

Authors:  Stephanie Züllig; Lukas J Neukomm; Marko Jovanovic; Steve J Charette; Nicholas N Lyssenko; Margaret S Halleck; Chris P M Reutelingsperger; Robert A Schlegel; Michael O Hengartner
Journal:  Curr Biol       Date:  2007-06-05       Impact factor: 10.834

8.  Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans.

Authors:  Siew Loon Ooi; James R Priess; Steven Henikoff
Journal:  PLoS Genet       Date:  2006-06       Impact factor: 5.917

9.  The small GTPase Rab2 functions in the removal of apoptotic cells in Caenorhabditis elegans.

Authors:  Paolo M Mangahas; Xiaomeng Yu; Kenneth G Miller; Zheng Zhou
Journal:  J Cell Biol       Date:  2008-01-28       Impact factor: 10.539

10.  Genetic control of programmed cell death in the Caenorhabditis elegans hermaphrodite germline.

Authors:  T L Gumienny; E Lambie; E Hartwieg; H R Horvitz; M O Hengartner
Journal:  Development       Date:  1999-02       Impact factor: 6.868

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  17 in total

1.  Binucleate germ cells in Caenorhabditis elegans are removed by physiological apoptosis.

Authors:  Stephan A Raiders; Michael D Eastwood; Meghan Bacher; James R Priess
Journal:  PLoS Genet       Date:  2018-07-19       Impact factor: 5.917

2.  A Non-Cell-Autonomous Role of BEC-1/BECN1/Beclin1 in Coordinating Cell-Cycle Progression and Stem Cell Proliferation during Germline Development.

Authors:  Kristina Ames; Dayse S Da Cunha; Brenda Gonzalez; Marina Konta; Feng Lin; Gabriel Shechter; Lev Starikov; Sara Wong; Hannes E Bülow; Alicia Meléndez
Journal:  Curr Biol       Date:  2017-03-09       Impact factor: 10.834

Review 3.  Membrane trafficking and phagosome maturation during the clearance of apoptotic cells.

Authors:  Nan Lu; Zheng Zhou
Journal:  Int Rev Cell Mol Biol       Date:  2012       Impact factor: 6.813

4.  The intrinsic apoptosis pathway mediates the pro-longevity response to mitochondrial ROS in C. elegans.

Authors:  Callista Yee; Wen Yang; Siegfried Hekimi
Journal:  Cell       Date:  2014-05-08       Impact factor: 41.582

5.  Autophagy genes function in apoptotic cell corpse clearance during C. elegans embryonic development.

Authors:  Shuyi Huang; Kailiang Jia; Ying Wang; Zheng Zhou; Beth Levine
Journal:  Autophagy       Date:  2012-10-29       Impact factor: 16.016

6.  The small GTPase RAB-35 facilitates the initiation of phagosome maturation and acts as a robustness factor for apoptotic cell clearance.

Authors:  Ryan Haley; Zheng Zhou
Journal:  Small GTPases       Date:  2019-10-24

7.  Three sorting nexins drive the degradation of apoptotic cells in response to PtdIns(3)P signaling.

Authors:  Nan Lu; Qian Shen; Timothy R Mahoney; Xianghua Liu; Zheng Zhou
Journal:  Mol Biol Cell       Date:  2011-02-01       Impact factor: 4.138

Review 8.  Worms, flies and four-legged friends: the applicability of biological models to the understanding of intestinal inflammatory diseases.

Authors:  Joyce Lin; David J Hackam
Journal:  Dis Model Mech       Date:  2011-06-13       Impact factor: 5.758

9.  Two PI 3-kinases and one PI 3-phosphatase together establish the cyclic waves of phagosomal PtdIns(3)P critical for the degradation of apoptotic cells.

Authors:  Nan Lu; Qian Shen; Timothy R Mahoney; Lukas J Neukomm; Ying Wang; Zheng Zhou
Journal:  PLoS Biol       Date:  2012-01-17       Impact factor: 8.029

10.  Live-cell imaging in Caenorhabditis elegans reveals the distinct roles of dynamin self-assembly and guanosine triphosphate hydrolysis in the removal of apoptotic cells.

Authors:  Bin He; Xiaomeng Yu; Moran Margolis; Xianghua Liu; Xiaohong Leng; Yael Etzion; Fei Zheng; Nan Lu; Florante A Quiocho; Dganit Danino; Zheng Zhou
Journal:  Mol Biol Cell       Date:  2009-12-16       Impact factor: 4.138

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