Literature DB >> 1960744

Determination of window size for analyzing DNA sequences.

F Tajima1.   

Abstract

DNA sequences are generally not random sequences. To show such nonrandomness visually, DNA sequence data are often plotted as moving averages for a certain length of window slid along a sequence. Here a simple algorithm is presented for determining the window size and for finding a nonrandom region of sequence.

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Year:  1991        PMID： 1960744     DOI： 10.1007/bf02103140

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  5 in total

1.  Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.

Authors:  S Karlin; S F Altschul
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

2.  Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection.

Authors:  A L Hughes; M Nei
Journal:  Proc Natl Acad Sci U S A       Date:  1989-02       Impact factor: 11.205

3.  The mosaic genome of warm-blooded vertebrates.

Authors:  G Bernardi; B Olofsson; J Filipski; M Zerial; J Salinas; G Cuny; M Meunier-Rotival; F Rodier
Journal:  Science       Date:  1985-05-24       Impact factor: 47.728

4.  Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection.

Authors:  A L Hughes; M Nei
Journal:  Nature       Date:  1988-09-08       Impact factor: 49.962

Review 5.  Codon usage and tRNA content in unicellular and multicellular organisms.

Authors:  T Ikemura
Journal:  Mol Biol Evol       Date:  1985-01       Impact factor: 16.240
  5 in total
  17 in total

1.  Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering.

Authors:  Vlad Novitsky; Sikhulile Moyo; Quanhong Lei; Victor DeGruttola; M Essex
Journal:  AIDS Res Hum Retroviruses       Date:  2015-02-06       Impact factor: 2.205

2.  Identification and characterization of genes susceptible to transcriptional cross-talk between the hypoxia and dioxin signaling cascades.

Authors:  KangAe Lee; Lyle D Burgoon; Laura Lamb; Edward Dere; Timothy R Zacharewski; John B Hogenesch; John J LaPres
Journal:  Chem Res Toxicol       Date:  2006-10       Impact factor: 3.739

3.  Molecular analysis of the intergenic region of the duplicated Amy genes of Drosophila melanogaster and Drosophila teissieri.

Authors:  E Okuyama; H Tachida; T Yamazaki
Journal:  J Mol Evol       Date:  1997-07       Impact factor: 2.395

4.  A method for determining the position and size of optimal sequence regions for phylogenetic analysis.

Authors:  M J Martin; F González-Candelas; F Sobrino; J Dopazo
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

5.  Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana.

Authors:  H Innan; F Tajima; R Terauchi; N T Miyashita
Journal:  Genetics       Date:  1996-08       Impact factor: 4.562

6.  Identification of an immunologically important hypervariable domain of major outer surface protein A of Borrelia burgdorferi.

Authors:  B C McGrath; J J Dunn; G Gorgone; D Guttman; D Dykhuizen; B J Luft
Journal:  Infect Immun       Date:  1995-04       Impact factor: 3.441

7.  Genetic diversity of ospC in a local population of Borrelia burgdorferi sensu stricto.

Authors:  I N Wang; D E Dykhuizen; W Qiu; J J Dunn; E M Bosler; B J Luft
Journal:  Genetics       Date:  1999-01       Impact factor: 4.562

8.  Study of Sylvilagus rabbit TRIM5α species-specific domain: how ancient endoviruses could have shaped the antiviral repertoire in Lagomorpha.

Authors:  Ana Lemos de Matos; Wessel van der Loo; Helena Areal; Dennis K Lanning; Pedro J Esteves
Journal:  BMC Evol Biol       Date:  2011-10-08       Impact factor: 3.260

9.  Genome-wide DNA polymorphism analyses using VariScan.

Authors:  Stephan Hutter; Albert J Vilella; Julio Rozas
Journal:  BMC Bioinformatics       Date:  2006-09-12       Impact factor: 3.169

10.  Genetic mapping reveals BjRf as a candidate gene controlling fertility restoration of the oxa CMS in Brassica juncea.

Authors:  Qiqi Cheng; Peijie Yao; Hui Li; Yiming Han; Kejing Xu; Shuangping Heng; Tingdong Fu; Zhengjie Wan
Journal:  Theor Appl Genet       Date:  2021-06-26       Impact factor: 5.699
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