Literature DB >> 19603409

Optimal diffusion MRI acquisition for fiber orientation density estimation: an analytic approach.

Nathan S White1, Anders M Dale.   

Abstract

An important challenge in the design of diffusion MRI experiments is how to optimize statistical efficiency, i.e., the accuracy with which parameters can be estimated from the diffusion data in a given amount of imaging time. In model-based spherical deconvolution analysis, the quantity of interest is the fiber orientation density (FOD). Here, we demonstrate how the spherical harmonics (SH) can be used to form an explicit analytic expression for the efficiency of the minimum variance (maximally efficient) linear unbiased estimator of the FOD. Using this expression, we calculate optimal b-values for maximum FOD estimation efficiency with SH expansion orders of L = 2, 4, 6, and 8 to be approximately b = 1,500, 3,000, 4,600, and 6,200 s/mm(2), respectively. However, the arrangement of diffusion directions and scanner-specific hardware limitations also play a role in determining the realizable efficiency of the FOD estimator that can be achieved in practice. We show how some commonly used methods for selecting diffusion directions are sometimes inefficient, and propose a new method for selecting diffusion directions in MRI based on maximizing the statistical efficiency. We further demonstrate how scanner-specific hardware limitations generally lead to optimal b-values that are slightly lower than the ideal b-values. In summary, the analytic expression for the statistical efficiency of the unbiased FOD estimator provides important insight into the fundamental tradeoff between angular resolution, b-value, and FOD estimation accuracy.

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Mesh:

Year:  2009        PMID: 19603409      PMCID: PMC3367885          DOI: 10.1002/hbm.20799

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  27 in total

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Authors:  Van J Wedeen; Patric Hagmann; Wen-Yih Isaac Tseng; Timothy G Reese; Robert M Weisskoff
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

3.  Measurement of fiber orientation distributions using high angular resolution diffusion imaging.

Authors:  Adam W Anderson
Journal:  Magn Reson Med       Date:  2005-11       Impact factor: 4.668

4.  New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter.

Authors:  Yaniv Assaf; Raisa Z Freidlin; Gustavo K Rohde; Peter J Basser
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5.  Apparent diffusion coefficients from high angular resolution diffusion imaging: estimation and applications.

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Journal:  Magn Reson Med       Date:  2006-08       Impact factor: 4.668

6.  Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis.

Authors:  Christopher P Hess; Pratik Mukherjee; Eric T Han; Duan Xu; Daniel B Vigneron
Journal:  Magn Reson Med       Date:  2006-07       Impact factor: 4.668

7.  An objective method for regularization of fiber orientation distributions derived from diffusion-weighted MRI.

Authors:  Ken E Sakaie; Mark J Lowe
Journal:  Neuroimage       Date:  2006-10-09       Impact factor: 6.556

8.  A model-based deconvolution approach to solve fiber crossing in diffusion-weighted MR imaging.

Authors:  Flavio Dell'Acqua; Giovanna Rizzo; Paola Scifo; Rafael Alonso Clarke; Giuseppe Scotti; Ferruccio Fazio
Journal:  IEEE Trans Biomed Eng       Date:  2007-03       Impact factor: 4.538

9.  Maximum entropy spherical deconvolution for diffusion MRI.

Authors:  Daniel C Alexander
Journal:  Inf Process Med Imaging       Date:  2005

10.  Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT).

Authors:  Evren Ozarslan; Timothy M Shepherd; Baba C Vemuri; Stephen J Blackband; Thomas H Mareci
Journal:  Neuroimage       Date:  2006-03-20       Impact factor: 6.556

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  13 in total

1.  Histologically derived fiber response functions for diffusion MRI vary across white matter fibers-An ex vivo validation study in the squirrel monkey brain.

Authors:  Kurt G Schilling; Yurui Gao; Iwona Stepniewska; Vaibhav Janve; Bennett A Landman; Adam W Anderson
Journal:  NMR Biomed       Date:  2019-03-25       Impact factor: 4.044

2.  Restriction spectrum imaging reveals decreased neurite density in patients with temporal lobe epilepsy.

Authors:  Richard Q Loi; Kelly M Leyden; Akshara Balachandra; Vedang Uttarwar; Donald J Hagler; Brianna M Paul; Anders M Dale; Nathan S White; Carrie R McDonald
Journal:  Epilepsia       Date:  2016-10-13       Impact factor: 5.864

3.  Investigating the tradeoffs between spatial resolution and diffusion sampling for brain mapping with diffusion tractography: time well spent?

Authors:  Evan Calabrese; Alexandra Badea; Christopher L Coe; Gabriele R Lubach; Martin A Styner; G Allan Johnson
Journal:  Hum Brain Mapp       Date:  2014-07-05       Impact factor: 5.038

4.  Restriction Spectrum Imaging Improves Risk Stratification in Patients with Glioblastoma.

Authors:  A P Krishnan; R Karunamuni; K M Leyden; T M Seibert; R L Delfanti; J M Kuperman; H Bartsch; P Elbe; A Srikant; A M Dale; S Kesari; D E Piccioni; J A Hattangadi-Gluth; N Farid; C R McDonald; N S White
Journal:  AJNR Am J Neuroradiol       Date:  2017-03-09       Impact factor: 3.825

Review 5.  Diffusion-weighted imaging in cancer: physical foundations and applications of restriction spectrum imaging.

Authors:  Nathan S White; Carrie McDonald; Carrie R McDonald; Niky Farid; Josh Kuperman; David Karow; Natalie M Schenker-Ahmed; Hauke Bartsch; Rebecca Rakow-Penner; Dominic Holland; Ahmed Shabaik; Atle Bjørnerud; Tuva Hope; Jona Hattangadi-Gluth; Michael Liss; J Kellogg Parsons; Clark C Chen; Steve Raman; Daniel Margolis; Robert E Reiter; Leonard Marks; Santosh Kesari; Arno J Mundt; Christopher J Kane; Christopher J Kaine; Bob S Carter; William G Bradley; Anders M Dale
Journal:  Cancer Res       Date:  2014-09-01       Impact factor: 12.701

6.  Probing tissue microstructure with restriction spectrum imaging: Histological and theoretical validation.

Authors:  Nathan S White; Trygve B Leergaard; Helen D'Arceuil; Jan G Bjaalie; Anders M Dale
Journal:  Hum Brain Mapp       Date:  2012-01-16       Impact factor: 5.038

Review 7.  Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation.

Authors:  Dmitry S Novikov; Els Fieremans; Sune N Jespersen; Valerij G Kiselev
Journal:  NMR Biomed       Date:  2018-10-15       Impact factor: 4.044

8.  Rotationally-invariant mapping of scalar and orientational metrics of neuronal microstructure with diffusion MRI.

Authors:  Dmitry S Novikov; Jelle Veraart; Ileana O Jelescu; Els Fieremans
Journal:  Neuroimage       Date:  2018-03-12       Impact factor: 6.556

9.  Investigating the capability to resolve complex white matter structures with high b-value diffusion magnetic resonance imaging on the MGH-USC Connectom scanner.

Authors:  Qiuyun Fan; Aapo Nummenmaa; Thomas Witzel; Roberta Zanzonico; Boris Keil; Stephen Cauley; Jonathan R Polimeni; Dylan Tisdall; Koene R A Van Dijk; Randy L Buckner; Van J Wedeen; Bruce R Rosen; Lawrence L Wald
Journal:  Brain Connect       Date:  2014-11

10.  Quantitative histological validation of diffusion MRI fiber orientation distributions in the rat brain.

Authors:  Trygve B Leergaard; Nathan S White; Alex de Crespigny; Ingeborg Bolstad; Helen D'Arceuil; Jan G Bjaalie; Anders M Dale
Journal:  PLoS One       Date:  2010-01-07       Impact factor: 3.240

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