Literature DB >> 19596708

Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010.

Kazuo Shinozaki, Hitoshi Sakakibara.   

Abstract

Mesh：

Year:  2009        PMID： 19596708      PMCID： PMC2709552          DOI： 10.1093/pcp/pcp085

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN： 0032-0781            Impact factor:   4.927


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  32 in total

Review 1.  Functional analysis of transcription factors in Arabidopsis.

Authors:  Nobutaka Mitsuda; Masaru Ohme-Takagi
Journal:  Plant Cell Physiol       Date:  2009-05-28       Impact factor: 4.927

2.  Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase.

Authors:  Yuji Sawada; Ayuko Kuwahara; Mutsumi Nagano; Tomoko Narisawa; Akane Sakata; Kazuki Saito; Masami Yokota Hirai
Journal:  Plant Cell Physiol       Date:  2009-06-03       Impact factor: 4.927

3.  Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice.

Authors:  Masayuki Fujiwara; Satoshi Hamada; Minori Hiratsuka; Yoichiro Fukao; Tsutomu Kawasaki; Ko Shimamoto
Journal:  Plant Cell Physiol       Date:  2009-06-05       Impact factor: 4.927

Review 4.  Phenome analysis in plant species using loss-of-function and gain-of-function mutants.

Authors:  Takashi Kuromori; Shinya Takahashi; Youichi Kondou; Kazuo Shinozaki; Minami Matsui
Journal:  Plant Cell Physiol       Date:  2009-06-05       Impact factor: 4.927

5.  Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa.

Authors:  Mikiko Kojima; Tomoe Kamada-Nobusada; Hirokazu Komatsu; Kentaro Takei; Takeshi Kuroha; Masaharu Mizutani; Motoyuki Ashikari; Miyako Ueguchi-Tanaka; Makoto Matsuoka; Koji Suzuki; Hitoshi Sakakibara
Journal:  Plant Cell Physiol       Date:  2009-04-15       Impact factor: 4.927

6.  RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex.

Authors:  Ayako Nakashima; Letian Chen; Nguyen Phuong Thao; Masayuki Fujiwara; Hann Ling Wong; Masayoshi Kuwano; Kenji Umemura; Ken Shirasu; Tsutomu Kawasaki; Ko Shimamoto
Journal:  Plant Cell       Date:  2008-08-22       Impact factor: 11.277

Review 7.  Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond.

Authors:  Ryan Lister; Brian D Gregory; Joseph R Ecker
Journal:  Curr Opin Plant Biol       Date:  2009-01-20       Impact factor: 7.834

8.  Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis.

Authors:  Keiko Yonekura-Sakakibara; Takayuki Tohge; Fumio Matsuda; Ryo Nakabayashi; Hiromitsu Takayama; Rie Niida; Akiko Watanabe-Takahashi; Eri Inoue; Kazuki Saito
Journal:  Plant Cell       Date:  2008-08-29       Impact factor: 11.277

9.  PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants.

Authors:  Yuko Makita; Norio Kobayashi; Yoshiki Mochizuki; Yuko Yoshida; Satomi Asano; Naohiko Heida; Mrinalini Deshpande; Rinki Bhatia; Akihiro Matsushima; Manabu Ishii; Shuji Kawaguchi; Kei Iida; Kosuke Hanada; Takashi Kuromori; Motoaki Seki; Kazuo Shinozaki; Tetsuro Toyoda
Journal:  Plant Cell Physiol       Date:  2009-06-15       Impact factor: 4.927

10.  PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning.

Authors:  Yuko Yoshida; Yuko Makita; Naohiko Heida; Satomi Asano; Akihiro Matsushima; Manabu Ishii; Yoshiki Mochizuki; Hiroshi Masuya; Shigeharu Wakana; Norio Kobayashi; Tetsuro Toyoda
Journal:  Nucleic Acids Res       Date:  2009-05-25       Impact factor: 16.971
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  7 in total

Review 1.  Plant systems biology: insights, advances and challenges.

Authors:  Bhavisha P Sheth; Vrinda S Thaker
Journal:  Planta       Date:  2014-03-27       Impact factor: 4.116

2.  OryzaExpress: an integrated database of gene expression networks and omics annotations in rice.

Authors:  Kazuki Hamada; Kohei Hongo; Keita Suwabe; Akifumi Shimizu; Taishi Nagayama; Reina Abe; Shunsuke Kikuchi; Naoki Yamamoto; Takaaki Fujii; Koji Yokoyama; Hiroko Tsuchida; Kazumi Sano; Takako Mochizuki; Nobuhiko Oki; Youko Horiuchi; Masahiro Fujita; Masao Watanabe; Makoto Matsuoka; Nori Kurata; Kentaro Yano
Journal:  Plant Cell Physiol       Date:  2010-12-23       Impact factor: 4.927

3.  The Plant Organelles Database 2 (PODB2): an updated resource containing movie data of plant organelle dynamics.

Authors:  Shoji Mano; Tomoki Miwa; Shuh-ichi Nishikawa; Tetsuro Mimura; Mikio Nishimura
Journal:  Plant Cell Physiol       Date:  2010-11-28       Impact factor: 4.927

4.  Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana.

Authors:  Reena Narsai; Ian Castleden; James Whelan
Journal:  BMC Plant Biol       Date:  2010-11-24       Impact factor: 4.215

Review 5.  Advances in omics and bioinformatics tools for systems analyses of plant functions.

Authors:  Keiichi Mochida; Kazuo Shinozaki
Journal:  Plant Cell Physiol       Date:  2011-12       Impact factor: 4.927

6.  Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function".

Authors:  Stephanie M Quanbeck; Libuse Brachova; Alexis A Campbell; Xin Guan; Ann Perera; Kun He; Seung Y Rhee; Preeti Bais; Julie A Dickerson; Philip Dixon; Gert Wohlgemuth; Oliver Fiehn; Lenore Barkan; Iris Lange; B Markus Lange; Insuk Lee; Diego Cortes; Carolina Salazar; Joel Shuman; Vladimir Shulaev; David V Huhman; Lloyd W Sumner; Mary R Roth; Ruth Welti; Hilal Ilarslan; Eve S Wurtele; Basil J Nikolau
Journal:  Front Plant Sci       Date:  2012-02-10       Impact factor: 5.753

Review 7.  Multi-Omics and Integrative Approach towards Understanding Salinity Tolerance in Rice: A Review.

Authors:  Pandiyan Muthuramalingam; Rajendran Jeyasri; Kasinathan Rakkammal; Lakkakula Satish; Sasanala Shamili; Adhimoolam Karthikeyan; Alaguvel Valliammai; Arumugam Priya; Anthonymuthu Selvaraj; Pandiyan Gowri; Qiang-Sheng Wu; Shunmugiah Karutha Pandian; Hyunsuk Shin; Jen-Tsung Chen; Venkidasamy Baskar; Muthu Thiruvengadam; Manoharan Akilan; Manikandan Ramesh
Journal:  Biology (Basel)       Date:  2022-07-07
  7 in total

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