Literature DB >> 19596615

Endocytosis and signalling: a meeting with mathematics.

Marc R Birtwistle1, Boris N Kholodenko.   

Abstract

Although endocytosis has traditionally been understood as a signal attenuation mechanism, an emerging view considers endocytosis as an integral part of signal propagation and processing. On the short time scale, trafficking of endocytic vesicles contributes to signal propagation from the surface to distant targets, with bi-directional communication between signalling and trafficking. Mathematical modelling helps combine the mechanistic, molecular knowledge with rigorous analysis of the complex output dynamics of endocytosis in time and space. Simulations reveal novel roles for endocytosis, including the control of cell polarity, enhancing the spatial signal propagation, and controlling the signal magnitudes, kinetics, and synchronization with stimulus dynamics.

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Year:  2009        PMID: 19596615      PMCID: PMC2745732          DOI: 10.1016/j.molonc.2009.05.009

Source DB:  PubMed          Journal:  Mol Oncol        ISSN: 1574-7891            Impact factor:   6.603


  89 in total

1.  Computational modeling of the dynamics of the MAP kinase cascade activated by surface and internalized EGF receptors.

Authors:  Birgit Schoeberl; Claudia Eichler-Jonsson; Ernst Dieter Gilles; Gertraud Müller
Journal:  Nat Biotechnol       Date:  2002-04       Impact factor: 54.908

2.  Slow diffusion of proteins in the yeast plasma membrane allows polarity to be maintained by endocytic cycling.

Authors:  Javier Valdez-Taubas; Hugh R B Pelham
Journal:  Curr Biol       Date:  2003-09-16       Impact factor: 10.834

3.  The inhibitory effect of ErbB2 on epidermal growth factor-induced formation of clathrin-coated pits correlates with retention of epidermal growth factor receptor-ErbB2 oligomeric complexes at the plasma membrane.

Authors:  Camilla Haslekås; Kamilla Breen; Ketil W Pedersen; Lene E Johannessen; Espen Stang; Inger Helene Madshus
Journal:  Mol Biol Cell       Date:  2005-10-05       Impact factor: 4.138

4.  The distribution of cell surface proteins on spreading cells. Comparison of theory with experiment.

Authors:  B Goldstein; F W Wiegel
Journal:  Biophys J       Date:  1988-02       Impact factor: 4.033

5.  Quantitative transcriptional control of ErbB receptor signaling undergoes graded to biphasic response for cell differentiation.

Authors:  Takeshi Nagashima; Hidetoshi Shimodaira; Kaori Ide; Takashi Nakakuki; Yukitaka Tani; Kaoru Takahashi; Noriko Yumoto; Mariko Hatakeyama
Journal:  J Biol Chem       Date:  2006-12-01       Impact factor: 5.157

6.  The receptor recycling pathway contains two distinct populations of early endosomes with different sorting functions.

Authors:  D R Sheff; E A Daro; M Hull; I Mellman
Journal:  J Cell Biol       Date:  1999-04-05       Impact factor: 10.539

7.  Internalized epidermal growth factor receptors participate in the activation of p21(ras) in fibroblasts.

Authors:  J M Haugh; A C Huang; H S Wiley; A Wells; D A Lauffenburger
Journal:  J Biol Chem       Date:  1999-11-26       Impact factor: 5.157

Review 8.  Localization of receptor-mediated signal transduction pathways: the inside story.

Authors:  Jason M Haugh
Journal:  Mol Interv       Date:  2002-09

9.  Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses.

Authors:  Marc R Birtwistle; Mariko Hatakeyama; Noriko Yumoto; Babatunde A Ogunnaike; Jan B Hoek; Boris N Kholodenko
Journal:  Mol Syst Biol       Date:  2007-11-13       Impact factor: 11.429

Review 10.  Macropinocytosis: searching for an endocytic identity and role in the uptake of cell penetrating peptides.

Authors:  Arwyn Tomos Jones
Journal:  J Cell Mol Med       Date:  2007 Jul-Aug       Impact factor: 5.310

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  15 in total

1.  Trafficking coordinate description of intracellular transport control of signaling networks.

Authors:  Jose M G Vilar; Leonor Saiz
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

Review 2.  The endocytic matrix.

Authors:  Giorgio Scita; Pier Paolo Di Fiore
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

3.  Spatial aspects in biological system simulations.

Authors:  Haluk Resat; Michelle N Costa; Harish Shankaran
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

4.  Intracellular regulation of cell signaling cascades: how location makes a difference.

Authors:  Yongyun Hwang; Praveen Kumar; Abdul I Barakat
Journal:  J Math Biol       Date:  2013-06-18       Impact factor: 2.259

5.  Endocytosis, signaling and cancer, much more than meets the eye. Preface.

Authors:  Pier Paolo Di Fiore
Journal:  Mol Oncol       Date:  2009-06-21       Impact factor: 6.603

6.  A screen for conditional growth suppressor genes identifies the Drosophila homolog of HD-PTP as a regulator of the oncoprotein Yorkie.

Authors:  M Melissa Gilbert; Marla Tipping; Alexey Veraksa; Kenneth H Moberg
Journal:  Dev Cell       Date:  2011-05-17       Impact factor: 12.270

7.  Age-related changes in scavenger receptor-mediated endocytosis in rat liver sinusoidal endothelial cells.

Authors:  Jaione Simon-Santamaria; Ivana Malovic; Alessandra Warren; Ana Oteiza; David Le Couteur; Bård Smedsrød; Peter McCourt; Karen Kristine Sørensen
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2010-06-24       Impact factor: 6.053

8.  Therapy operating characteristic curves: tools for precision chemotherapy.

Authors:  Harrison H Barrett; David S Alberts; James M Woolfenden; Luca Caucci; John W Hoppin
Journal:  J Med Imaging (Bellingham)       Date:  2016-05-02

9.  Quantifying and Reducing Uncertainties in Cancer Therapy.

Authors:  Harrison H Barrett; David S Alberts; James M Woolfenden; Zhonglin Liu; Luca Caucci; John W Hoppin
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-02-21

10.  Signaling regulated endocytosis and exocytosis lead to mating pheromone concentration dependent morphologies in yeast.

Authors:  Ching-Shan Chou; Travis I Moore; Steven D Chang; Qing Nie; Tau-Mu Yi
Journal:  FEBS Lett       Date:  2012-10-27       Impact factor: 4.124

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