Literature DB >> 19595298

The crystal structure of a family GH25 lysozyme from Bacillus anthracis implies a neighboring-group catalytic mechanism with retention of anomeric configuration.

Carlos Martinez-Fleites1, Justyna E Korczynska, Gideon J Davies, Matthew J Cope, Johan P Turkenburg, Edward J Taylor.   

Abstract

Lysozymes are found in many of the sequence-based families of glycoside hydrolases (www.cazy.org) where they show considerable structural and mechanistic diversity. Lysozymes from glycoside hydrolase family GH25 adopt a (alpha/beta)(5)(beta)(3)-barrel-like fold with a proposal in the literature that these enzymes act with inversion of anomeric configuration; the lack of a suitable substrate, however, means that no group has successfully demonstrated the configuration of the product. Here we report the 3-D structure of the GH25 enzyme from Bacillus anthracis at 1.4A resolution. We show that the active center is extremely similar to those from glycoside hydrolase families GH18, GH20, GH56, GH84, and GH85 implying that, in the absence of evidence to the contrary, GH25 enzymes also act with net retention of anomeric configuration using the neighboring-group catalytic mechanism that is common to this 'super-family' of enzymes.

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Year:  2009        PMID: 19595298     DOI: 10.1016/j.carres.2009.06.001

Source DB:  PubMed          Journal:  Carbohydr Res        ISSN: 0008-6215            Impact factor:   2.104


  13 in total

1.  The structure of a family GH25 lysozyme from Aspergillus fumigatus.

Authors:  Justyna E Korczynska; Steffen Danielsen; Ulrika Schagerlöf; Johan P Turkenburg; Gideon J Davies; Keith S Wilson; Edward J Taylor
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-08-21

2.  Purification, crystallization and preliminary X-ray studies of the putative lysozyme SP0987 from Streptococcus pneumoniae.

Authors:  Siqiang Niu; Miao Luo; Ailong Huang; Yibing Yin; Deqiang Wang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-24

3.  Mechanism, Structure, and Inhibition of O-GlcNAc Processing Enzymes.

Authors:  Tracey M Gloster; David J Vocadlo
Journal:  Curr Signal Transduct Ther       Date:  2010-01

4.  Transcriptomic analysis of xylan utilization systems in Paenibacillus sp. strain JDR-2.

Authors:  Neha Sawhney; Casey Crooks; Franz St John; James F Preston
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

Review 5.  Glycosidase inhibition: assessing mimicry of the transition state.

Authors:  Tracey M Gloster; Gideon J Davies
Journal:  Org Biomol Chem       Date:  2009-11-05       Impact factor: 3.876

6.  Bacteriocin protein BacL1 of Enterococcus faecalis is a peptidoglycan D-isoglutamyl-L-lysine endopeptidase.

Authors:  Jun Kurushima; Ikue Hayashi; Motoyuki Sugai; Haruyoshi Tomita
Journal:  J Biol Chem       Date:  2013-11-14       Impact factor: 5.157

7.  Identification and characterization of an autolysin gene, atlA, from Streptococcus criceti.

Authors:  Haruki Tamura; Arisa Yamada; Hirohisa Kato
Journal:  J Microbiol       Date:  2012-11-04       Impact factor: 3.422

8.  Biochemical characterization of the major N-acetylmuramidase from Lactobacillus buchneri.

Authors:  Julia Anzengruber; Pascal Courtin; Ingmar J J Claes; Monika Debreczeny; Stefan Hofbauer; Christian Obinger; Marie-Pierre Chapot-Chartier; Jos Vanderleyden; Paul Messner; Christina Schäffer
Journal:  Microbiology (Reading)       Date:  2014-05-24       Impact factor: 2.777

9.  Structure of the glycosyltransferase EryCIII in complex with its activating P450 homologue EryCII.

Authors:  Martin C Moncrieffe; Maria-Jose Fernandez; Dieter Spiteller; Hiroyoshi Matsumura; Nicholas J Gay; Ben F Luisi; Peter F Leadlay
Journal:  J Mol Biol       Date:  2011-10-25       Impact factor: 5.469

10.  Structural basis of the novel S. pneumoniae virulence factor, GHIP, a glycosyl hydrolase 25 participating in host-cell invasion.

Authors:  Siqiang Niu; Miao Luo; Jian Tang; Hua Zhou; Yangli Zhang; Xun Min; Xuefei Cai; Wenlu Zhang; Wenchu Xu; Defeng Li; Jingjin Ding; Yonglin Hu; Dacheng Wang; Ailong Huang; Yibin Yin; Deqiang Wang
Journal:  PLoS One       Date:  2013-07-16       Impact factor: 3.240

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