Literature DB >> 19594431

Prediction of G-protein-coupled receptor classes in low homology using Chou's pseudo amino acid composition with approximate entropy and hydrophobicity patterns.

Q Gu1, Y S Ding, T L Zhang.   

Abstract

We use approximate entropy and hydrophobicity patterns to predict G-protein-coupled receptors. Adaboost classifier is adopted as the prediction engine. A low homology dataset is used to validate the proposed method. Compared with the results reported, the successful rate is encouraging. The source code is written by Matlab.

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Year:  2010        PMID: 19594431     DOI: 10.2174/092986610791112693

Source DB:  PubMed          Journal:  Protein Pept Lett        ISSN: 0929-8665            Impact factor:   1.890


  30 in total

1.  Prediction of ketoacyl synthase family using reduced amino acid alphabets.

Authors:  Wei Chen; Pengmian Feng; Hao Lin
Journal:  J Ind Microbiol Biotechnol       Date:  2011-10-26       Impact factor: 3.346

2.  iRSpot-GAEnsC: identifing recombination spots via ensemble classifier and extending the concept of Chou's PseAAC to formulate DNA samples.

Authors:  Muhammad Kabir; Maqsood Hayat
Journal:  Mol Genet Genomics       Date:  2015-08-30       Impact factor: 3.291

3.  In vitro transcriptomic prediction of hepatotoxicity for early drug discovery.

Authors:  Feng Cheng; Dan Theodorescu; Ira G Schulman; Jae K Lee
Journal:  J Theor Biol       Date:  2011-08-27       Impact factor: 2.691

4.  A Method for the Annotation of Functional Similarities of Coding DNA Sequences: the Case of a Populated Cluster of Transmembrane Proteins.

Authors:  Miguel Angel Fuertes; José Ramón Rodrigo; Carlos Alonso
Journal:  J Mol Evol       Date:  2016-11-03       Impact factor: 2.395

5.  EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC.

Authors:  Tzu-Hao Chang; Li-Ching Wu; Tzong-Yi Lee; Shu-Pin Chen; Hsien-Da Huang; Jorng-Tzong Horng
Journal:  J Comput Aided Mol Des       Date:  2013-01-03       Impact factor: 3.686

Review 6.  Some illuminating remarks on molecular genetics and genomics as well as drug development.

Authors:  Kuo-Chen Chou
Journal:  Mol Genet Genomics       Date:  2020-01-01       Impact factor: 3.291

7.  Plant-mPLoc: a top-down strategy to augment the power for predicting plant protein subcellular localization.

Authors:  Kuo-Chen Chou; Hong-Bin Shen
Journal:  PLoS One       Date:  2010-06-28       Impact factor: 3.240

Review 8.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

9.  Comprehensive comparative analysis and identification of RNA-binding protein domains: multi-class classification and feature selection.

Authors:  Samad Jahandideh; Vinodh Srinivasasainagendra; Degui Zhi
Journal:  J Theor Biol       Date:  2012-08-03       Impact factor: 2.691

10.  Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network.

Authors:  Bi-Qing Li; Tao Huang; Lei Liu; Yu-Dong Cai; Kuo-Chen Chou
Journal:  PLoS One       Date:  2012-04-04       Impact factor: 3.240

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