Literature DB >> 19590923

Genome size evaluation in Tetraodontiform fishes from the Neotropical region.

Rafael Bueno Noleto1, Fernando de Souza Fonseca Guimarães, Katia Sabrina Paludo, Marcelo Ricardo Vicari, Roberto Ferreira Artoni, Marta Margarete Cestari.   

Abstract

Smooth pufferfish of the family Tetraodontidae had become pure genomic models because of the remarkable compaction of their genome. This trait seems to be the result of DNA loss following its divergence from the sister family Diodontidae, which possess larger genomes. In this study, flow cytometry was used for estimate the genome size of four pufferfish species from the Neotropical region. Cytogenetic data and confocal microscopy were also used attempting to confirm relationships between DNA content and cytological parameters. The haploid genome size was 0.71 + or - 0.03 pg for Sphoeroides greeleyi, 0.34 + or - 0.01 pg for Sphoeroides spengleri, 0.82 + or - 0.03 pg for Sphoeroides testudineus (all Tetraodontidae), and 1.00 + or - 0.03 pg for Chilomycterus spinosus (Diodontidae). These differences are not related with ploidy level, because 46 chromosomes are considered basal for both families. The value for S. spengleri represents the smallest vertebrate genome reported to date. Since erythrocyte cell and nuclear sizes are strongly correlated with genome size, the variation in this last is considered under both adaptive and evolutionary perspectives.

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Year:  2009        PMID: 19590923     DOI: 10.1007/s10126-009-9215-0

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  22 in total

1.  Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning.

Authors:  G Elgar; M S Clark; S Meek; S Smith; S Warner; Y J Edwards; N Bouchireb; A Cottage; G S Yeo; Y Umrania; G Williams; S Brenner
Journal:  Genome Res       Date:  1999-10       Impact factor: 9.043

Review 2.  The modulation of DNA content: proximate causes and ultimate consequences.

Authors:  T R Gregory; P D Hebert
Journal:  Genome Res       Date:  1999-04       Impact factor: 9.043

Review 3.  Fugu: a compact vertebrate reference genome.

Authors:  B Venkatesh; P Gilligan; S Brenner
Journal:  FEBS Lett       Date:  2000-06-30       Impact factor: 4.124

4.  Genome size evolution in pufferfish: a comparative analysis of diodontid and tetraodontid pufferfish genomes.

Authors:  Daniel E Neafsey; Stephen R Palumbi
Journal:  Genome Res       Date:  2003-05       Impact factor: 9.043

5.  Physical mapping of 5S and 45S rDNA loci in pufferfishes (Tetraodontiformes).

Authors:  Rafael Bueno Noleto; Marcelo Ricardo Vicari; Roger Raupp Cipriano; Roberto Ferreira Artoni; Marta Margarete Cestari
Journal:  Genetica       Date:  2006-08-04       Impact factor: 1.082

Review 6.  Quality not quantity: the pufferfish genome.

Authors:  G Elgar
Journal:  Hum Mol Genet       Date:  1996       Impact factor: 6.150

7.  The DNA content of sperm of Drosophila melanogaster.

Authors:  E M Rasch; H J Barr; R W Rasch
Journal:  Chromosoma       Date:  1971       Impact factor: 4.316

8.  Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.

Authors:  Olivier Jaillon; Jean-Marc Aury; Frédéric Brunet; Jean-Louis Petit; Nicole Stange-Thomann; Evan Mauceli; Laurence Bouneau; Cécile Fischer; Catherine Ozouf-Costaz; Alain Bernot; Sophie Nicaud; David Jaffe; Sheila Fisher; Georges Lutfalla; Carole Dossat; Béatrice Segurens; Corinne Dasilva; Marcel Salanoubat; Michael Levy; Nathalie Boudet; Sergi Castellano; Véronique Anthouard; Claire Jubin; Vanina Castelli; Michael Katinka; Benoît Vacherie; Christian Biémont; Zineb Skalli; Laurence Cattolico; Julie Poulain; Véronique De Berardinis; Corinne Cruaud; Simone Duprat; Philippe Brottier; Jean-Pierre Coutanceau; Jérôme Gouzy; Genis Parra; Guillaume Lardier; Charles Chapple; Kevin J McKernan; Paul McEwan; Stephanie Bosak; Manolis Kellis; Jean-Nicolas Volff; Roderic Guigó; Michael C Zody; Jill Mesirov; Kerstin Lindblad-Toh; Bruce Birren; Chad Nusbaum; Daniel Kahn; Marc Robinson-Rechavi; Vincent Laudet; Vincent Schachter; Francis Quétier; William Saurin; Claude Scarpelli; Patrick Wincker; Eric S Lander; Jean Weissenbach; Hugues Roest Crollius
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

9.  Genome duplication, a trait shared by 22000 species of ray-finned fish.

Authors:  John S Taylor; Ingo Braasch; Tancred Frickey; Axel Meyer; Yves Van de Peer
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

10.  Investigation of loss and gain of introns in the compact genomes of pufferfishes (Fugu and Tetraodon).

Authors:  Yong-Hwee Loh; Sydney Brenner; Byrappa Venkatesh
Journal:  Mol Biol Evol       Date:  2007-12-17       Impact factor: 16.240

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  2 in total

1.  Chromosome evolution and genome miniaturization in minifish.

Authors:  Shaojun Liu; Tan Heok Hui; Sze Ley Tan; Yunhan Hong
Journal:  PLoS One       Date:  2012-05-16       Impact factor: 3.240

2.  Karyotypic conservatism in five species of Prochilodus (Characiformes, Prochilodontidae) disclosed by cytogenetic markers.

Authors:  Tatiana Aparecida Voltolin; Manolo Penitente; Bruna Bueno Mendonça; José Augusto Senhorini; Fausto Foresti; Fábio Porto-Foresti
Journal:  Genet Mol Biol       Date:  2013-08-30       Impact factor: 1.771

  2 in total

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