Literature DB >> 19588982

Deciphering intrinsic deactivation/isomerization routes in a phytochrome chromophore model.

Piero Altoè1, Teresa Climent, Giulia C De Fusco, Marco Stenta, Andrea Bottoni, Luis Serrano-Andrés, Manuela Merchán, Giorgio Orlandi, Marco Garavelli.   

Abstract

High level ab initio correlated (CASPT2) computations have been used to elucidate the details of the photoinduced molecular motion and decay mechanisms of a realistic phytochrome chromophore model in vacuo and to explore the reasons underneath its photophysical/photochemical properties. Competitive deactivation routes emerge that unveil the primary photochemical event and the intrinsic photoisomerization ability of this system. The emerged in vacuo based static (i.e., nondynamical) reactivity model accounts for the formation of different excited state intermediates and suggests a qualitative rationale for the short (picosecond) excited state lifetime and ultrafast decay of the emission, its small quantum yield, and the multiexponential decay observed in both solvent and phytochromes. It is thus tentatively suggested that this is a more general deactivation scheme for photoexcited phytochrome chromophores that is independent of the surrounding environment. Spectroscopic properties have also been simulated in both isolated conditions and the protein that satisfactorily match experimental data. For this purpose, preliminary hybrid QM/MM computations at the correlated (CASPT2) level have been used in the protein and are reported here for the first time.

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Year:  2009        PMID: 19588982     DOI: 10.1021/jp904669x

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

1.  The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.

Authors:  Chavdar Slavov; Tobias Fischer; Avishai Barnoy; Heewhan Shin; Aditya G Rao; Christian Wiebeler; Xiaoli Zeng; Yafang Sun; Qianzhao Xu; Alexander Gutt; Kai-Hong Zhao; Wolfgang Gärtner; Xiaojing Yang; Igor Schapiro; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-26       Impact factor: 11.205

2.  On the origin of fluorescence in bacteriophytochrome infrared fluorescent proteins.

Authors:  Alex A Samma; Chelsea K Johnson; Shuang Song; Samuel Alvarez; Marc Zimmer
Journal:  J Phys Chem B       Date:  2010-11-03       Impact factor: 2.991

3.  Bright blue-shifted fluorescent proteins with Cys in the GAF domain engineered from bacterial phytochromes: fluorescence mechanisms and excited-state dynamics.

Authors:  Yusaku Hontani; Daria M Shcherbakova; Mikhail Baloban; Jingyi Zhu; Vladislav V Verkhusha; John T M Kennis
Journal:  Sci Rep       Date:  2016-11-18       Impact factor: 4.379

  3 in total

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