Literature DB >> 19587657

PRIDE Converter: making proteomics data-sharing easy.

Harald Barsnes, Juan Antonio Vizcaíno, Ingvar Eidhammer, Lennart Martens.   

Abstract

Mesh：

Year:  2009        PMID： 19587657     DOI： 10.1038/nbt0709-598

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  10 in total

Review 1.  Mass spectrometry-based proteomics.

Authors:  Ruedi Aebersold; Matthias Mann
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

2.  The need for a public proteomics repository.

Authors:  John T Prince; Mark W Carlson; Rong Wang; Peng Lu; Edward M Marcotte
Journal:  Nat Biotechnol       Date:  2004-04       Impact factor: 54.908

3.  Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories.

Authors:  Lennart Martens; Alexey I Nesvizhskii; Henning Hermjakob; Marcin Adamski; Gilbert S Omenn; Joël Vandekerckhove; Kris Gevaert
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

4.  PRIDE: the proteomics identifications database.

Authors:  Lennart Martens; Henning Hermjakob; Philip Jones; Marcin Adamski; Chris Taylor; David States; Kris Gevaert; Joël Vandekerckhove; Rolf Apweiler
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

5.  Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry.

Authors:  John M Asara; Mary H Schweitzer; Lisa M Freimark; Matthew Phillips; Lewis C Cantley
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

Review 6.  Recent developments in public proteomic MS repositories and pipelines.

Authors:  Jennifer A Mead; Luca Bianco; Conrad Bessant
Journal:  Proteomics       Date:  2009-02       Impact factor: 3.984

7.  PRIDE: a public repository of protein and peptide identifications for the proteomics community.

Authors:  Philip Jones; Richard G Côté; Lennart Martens; Antony F Quinn; Chris F Taylor; William Derache; Henning Hermjakob; Rolf Apweiler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

8.  The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Authors:  Richard G Côté; Philip Jones; Lennart Martens; Samuel Kerrien; Florian Reisinger; Quan Lin; Rasko Leinonen; Rolf Apweiler; Henning Hermjakob
Journal:  BMC Bioinformatics       Date:  2007-10-18       Impact factor: 3.169

9.  The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.

Authors:  Richard G Côté; Philip Jones; Lennart Martens; Rolf Apweiler; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2008-05-08       Impact factor: 16.971

10.  PRIDE: new developments and new datasets.

Authors:  Philip Jones; Richard G Côté; Sang Yun Cho; Sebastian Klie; Lennart Martens; Antony F Quinn; David Thorneycroft; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2007-11-22       Impact factor: 16.971
  10 in total
  71 in total

1.  The Sharpin interactome reveals a role for Sharpin in lamellipodium formation via the Arp2/3 complex.

Authors:  Meraj H Khan; Siiri I Salomaa; Guillaume Jacquemet; Umar Butt; Mitro Miihkinen; Takahiro Deguchi; Elena Kremneva; Pekka Lappalainen; Martin J Humphries; Jeroen Pouwels
Journal:  J Cell Sci       Date:  2017-08-03       Impact factor: 5.285

2.  Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture.

Authors:  Louise Thomas; David A Hodgson; Alexander Wentzel; Kay Nieselt; Trond E Ellingsen; Jonathan Moore; Edward R Morrissey; Roxane Legaie; Wolfgang Wohlleben; Antonio Rodríguez-García; Juan F Martín; Nigel J Burroughs; Elizabeth M H Wellington; Margaret C M Smith
Journal:  Mol Cell Proteomics       Date:  2011-12-06       Impact factor: 5.911

3.  Lipogenesis is decreased by grape seed proanthocyanidins according to liver proteomics of rats fed a high fat diet.

Authors:  Isabel Baiges; Johan Palmfeldt; Cinta Bladé; Niels Gregersen; Lluís Arola
Journal:  Mol Cell Proteomics       Date:  2010-03-23       Impact factor: 5.911

4.  Large scale phosphoproteome profiles comprehensive features of mouse embryonic stem cells.

Authors:  Qing-Run Li; Xiao-Bin Xing; Tao-Tao Chen; Rong-Xia Li; Jie Dai; Quan-Hu Sheng; Shun-Mei Xin; Li-Li Zhu; Ying Jin; Gang Pei; Jiu-Hong Kang; Yi-Xue Li; Rong Zeng
Journal:  Mol Cell Proteomics       Date:  2010-12-13       Impact factor: 5.911

5.  A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites.

Authors:  Alexander Koch; Daria Gawron; Sandra Steyaert; Elvis Ndah; Jeroen Crappé; Sarah De Keulenaer; Ellen De Meester; Ming Ma; Ben Shen; Kris Gevaert; Wim Van Criekinge; Petra Van Damme; Gerben Menschaert
Journal:  Proteomics       Date:  2014-10-02       Impact factor: 3.984

6.  The interactome of the human respiratory syncytial virus NS1 protein highlights multiple effects on host cell biology.

Authors:  Weining Wu; Kim C Tran; Michael N Teng; Kate J Heesom; David A Matthews; John N Barr; Julian A Hiscox
Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

7.  An FMN hydrolase of the haloacid dehalogenase superfamily is active in plant chloroplasts.

Authors:  Renu Rawat; Francisco J Sandoval; Zhaoyang Wei; Robert Winkler; Sanja Roje
Journal:  J Biol Chem       Date:  2011-10-14       Impact factor: 5.157

8.  Five friends of methylated chromatin target of protein-arginine-methyltransferase[prmt]-1 (chtop), a complex linking arginine methylation to desumoylation.

Authors:  Pavlos Fanis; Nynke Gillemans; Ali Aghajanirefah; Farzin Pourfarzad; Jeroen Demmers; Fatemehsadat Esteghamat; Ratna K Vadlamudi; Frank Grosveld; Sjaak Philipsen; Thamar B van Dijk
Journal:  Mol Cell Proteomics       Date:  2012-08-07       Impact factor: 5.911

9.  Identifying blood biomarkers and physiological processes that distinguish humans with superior performance under psychological stress.

Authors:  Amanda M Cooksey; Nausheen Momen; Russell Stocker; Shane C Burgess
Journal:  PLoS One       Date:  2009-12-18       Impact factor: 3.240

10.  The Ontology Lookup Service: bigger and better.

Authors:  Richard Côté; Florian Reisinger; Lennart Martens; Harald Barsnes; Juan Antonio Vizcaino; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2010-05-11       Impact factor: 16.971
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