Literature DB >> 19584066

Evidence for human microRNA-offset RNAs in small RNA sequencing data.

David Langenberger1, Clara Bermudez-Santana, Jana Hertel, Steve Hoffmann, Philipp Khaitovich, Peter F Stadler.   

Abstract

MicroRNA-offset-RNAs (moRNAs) were recently detected as highly abundant class of small RNAs in a basal chordate. Using short read sequencing data, we show here that moRNAs are also produced from human microRNA precursors, albeit at quite low expression levels. The expression levels of moRNAs are unrelated to those of the associated microRNAs. Surprisingly, microRNA precursors that also show moRNAs are typically evolutionarily old, comprising more than half of the microRNA families that were present in early Bilateria, while evidence for moRNAs was found only for a relative small fraction of microRNA families of recent origin.

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Year:  2009        PMID: 19584066     DOI: 10.1093/bioinformatics/btp419

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  67 in total

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2.  Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

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Journal:  Nat Struct Mol Biol       Date:  2010-07-11       Impact factor: 15.369

Review 3.  miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants.

Authors:  T Desvignes; P Batzel; E Berezikov; K Eilbeck; J T Eppig; M S McAndrews; A Singer; J H Postlethwait
Journal:  Trends Genet       Date:  2015-10-08       Impact factor: 11.639

Review 4.  MicroRNAs and other non-coding RNAs as targets for anticancer drug development.

Authors:  Hui Ling; Muller Fabbri; George A Calin
Journal:  Nat Rev Drug Discov       Date:  2013-11       Impact factor: 84.694

5.  Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training.

Authors:  Neil R Smalheiser; Giovanni Lugli; Jyothi Thimmapuram; Edwin H Cook; John Larson
Journal:  RNA       Date:  2010-11-02       Impact factor: 4.942

6.  miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data.

Authors:  David Hendrix; Michael Levine; Weiyang Shi
Journal:  Genome Biol       Date:  2010-04-06       Impact factor: 13.583

7.  Multiple distinct small RNAs originate from the same microRNA precursors.

Authors:  Weixiong Zhang; Shang Gao; Xuefeng Zhou; Jing Xia; Padmanabhan Chellappan; Xiang Zhou; Xiaoming Zhang; Hailing Jin
Journal:  Genome Biol       Date:  2010-08-09       Impact factor: 13.583

8.  Discovery of microRNAs and other small RNAs in solid tumors.

Authors:  Eti Meiri; Asaf Levy; Hila Benjamin; Miriam Ben-David; Lahav Cohen; Avital Dov; Nir Dromi; Eran Elyakim; Noga Yerushalmi; Orit Zion; Gila Lithwick-Yanai; Einat Sitbon
Journal:  Nucleic Acids Res       Date:  2010-05-18       Impact factor: 16.971

9.  RNA Genes: Retroelements and Virally Retroposable microRNAs in Human Embryonic Stem Cells.

Authors:  Yoichi R Fujii
Journal:  Open Virol J       Date:  2010-05-25

10.  Atypical transcription of microRNA gene fragments.

Authors:  Jin Song Gao; Yingjie Zhang; Ming Li; Lynne D Tucker; Jason T Machan; Peter Quesenberry; Isidore Rigoutsos; Bharat Ramratnam
Journal:  Nucleic Acids Res       Date:  2010-01-21       Impact factor: 16.971

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