Literature DB >> 19575251

Theoretical study of a membrane channel gated by ATP.

J G Orlandi1, J M Sancho.   

Abstract

We study channel transport across biomembranes. We propose a model that couples the diffusive dynamics with the gating process via a two-state ratchet mechanism. This gating process is governed by ATP binding and hydrolysis, and the process exhibits Michaelis-Menten enzymatic kinetics. The particle flow and permeability of the channel are studied both analytically and numerically in the steady-state regime, while working between fixed concentrations. The results are compared with simpler models and with experimental data. Also, a simulation framework, that allows high flexibility in parameter exploration, is introduced.

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Year:  2009        PMID: 19575251     DOI: 10.1140/epje/i2009-10483-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  20 in total

1.  Asymmetric diffusion through synthetic nanopores.

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Journal:  Phys Rev Lett       Date:  2005-02-03       Impact factor: 9.161

Review 2.  Engineering light-gated ion channels.

Authors:  Matthew R Banghart; Matthew Volgraf; Dirk Trauner
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3.  Langevin trajectories between fixed concentrations.

Authors:  B Nadler; Z Schuss; A Singer
Journal:  Phys Rev Lett       Date:  2005-06-02       Impact factor: 9.161

4.  Negative incremental resistance induced by calcium in asymmetric nanopores.

Authors:  Zuzanna S Siwy; Matthew R Powell; Eric Kalman; R Dean Astumian; Robert S Eisenberg
Journal:  Nano Lett       Date:  2006-03       Impact factor: 11.189

Review 5.  The art of building small: from molecular switches to molecular motors.

Authors:  Ben L Feringa
Journal:  J Org Chem       Date:  2007-07-13       Impact factor: 4.354

6.  Activation of Na+ and K+ pumping modes of (Na,K)-ATPase by an oscillating electric field.

Authors:  D S Liu; R D Astumian; T Y Tsong
Journal:  J Biol Chem       Date:  1990-05-05       Impact factor: 5.157

7.  Functional reconstitution of the purified brain sodium channel in planar lipid bilayers.

Authors:  R P Hartshorne; B U Keller; J A Talvenheimo; W A Catterall; M Montal
Journal:  Proc Natl Acad Sci U S A       Date:  1985-01       Impact factor: 11.205

8.  Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches.

Authors:  O P Hamill; A Marty; E Neher; B Sakmann; F J Sigworth
Journal:  Pflugers Arch       Date:  1981-08       Impact factor: 3.657

9.  Regulation of CFTR ion channel gating by MgATP.

Authors:  A A Aleksandrov; J R Riordan
Journal:  FEBS Lett       Date:  1998-07-10       Impact factor: 4.124

Review 10.  Ion channels versus ion pumps: the principal difference, in principle.

Authors:  David C Gadsby
Journal:  Nat Rev Mol Cell Biol       Date:  2009-04-02       Impact factor: 94.444

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  1 in total

1.  Wavelet-based protocols for ion channel electrophysiology.

Authors:  Armin Kargol
Journal:  BMC Biophys       Date:  2013-03-14       Impact factor: 4.778

  1 in total

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