Literature DB >> 19574457

Virtual taphonomy using synchrotron tomographic microscopy reveals cryptic features and internal structure of modern and fossil plants.

Selena Y Smith1, Margaret E Collinson, Paula J Rudall, David A Simpson, Federica Marone, Marco Stampanoni.   

Abstract

While more commonly applied in zoology, synchrotron radiation X-ray tomographic microscopy (SRXTM) is well-suited to nondestructive study of the morphology and anatomy of both fossil and modern plants. SRXTM uses hard X-rays and a monochromatic light source to provide high-resolution data with little beam-hardening, resulting in slice data with clear boundaries between materials. Anatomy is readily visualized, including various planes of section from a single specimen, as clear as in traditional histological sectioning at low magnifications. Thus, digital sectioning of rare or difficult material is possible. Differential X-ray attenuation allows visualization of different layers or chemistries to enable virtual 3-dimensional (3D) dissections of material. Virtual potential fossils can be visualized and digital tissue removal reveals cryptic underlying morphology. This is essential for fossil identification and for comparisons between assemblages where fossils are preserved by different means. SRXTM is a powerful approach for botanical studies using morphology and anatomy. The ability to gain search images in both 2D and 3D for potential fossils gives paleobotanists a tool--virtual taphonomy--to improve our understanding of plant evolution and paleobiogeography.

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Mesh:

Year:  2009        PMID: 19574457      PMCID: PMC2715531          DOI: 10.1073/pnas.0901468106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  20 in total

1.  Branching out with a CT scanner.

Authors:  Pierre Dutilleul; Melinda Lontoc-Roy; Shiv O Prasher
Journal:  Trends Plant Sci       Date:  2005-09       Impact factor: 18.313

2.  Phase contrast X-ray synchrotron imaging: opening access to fossil inclusions in opaque amber.

Authors:  Malvina Lak; Didier Néraudeau; André Nel; Peter Cloetens; Vincent Perrichot; Paul Tafforeau
Journal:  Microsc Microanal       Date:  2008-03-03       Impact factor: 4.127

3.  A new preparation method to study fresh plant structures with X-ray computed tomography.

Authors:  O Leroux; F Leroux; E Bellefroid; M Claeys; M Couvreur; G Borgonie; L Van Hoorebeke; B Masschaele; R Viane
Journal:  J Microsc       Date:  2009-01       Impact factor: 1.758

4.  Scanning electron microscopy and synchrotron radiation x-ray tomographic microscopy of 330 million year old charcoalified seed fern fertile organs.

Authors:  Andrew C Scott; Jean Galtier; Neil J Gostling; Selena Y Smith; Margaret E Collinson; Marco Stampanoni; Federica Marone; Philip C J Donoghue; Stefan Bengtson
Journal:  Microsc Microanal       Date:  2009-04       Impact factor: 4.127

5.  Early Cretaceous mesofossils from Portugal and eastern North America related to the Bennettitales-Erdtmanithecales-Gnetales group.

Authors:  Else Marie Friis; Kaj Raunsgaard Pedersen; Peter R Crane
Journal:  Am J Bot       Date:  2009-01       Impact factor: 3.844

6.  Distinguishing angiophytes from the earliest angiosperms: A Lower Cretaceous (Valanginian-Hauterivian) fruit-like reproductive structure.

Authors:  Ruth A Stockey; Gar W Rothwell
Journal:  Am J Bot       Date:  2009-01       Impact factor: 3.844

7.  Beardia vancouverensis gen. et sp. nov. (Juglandaceae): permineralized fruits from the Eocene of British Columbia.

Authors:  Lindsay L Elliott; Randal A Mindell; Ruth A Stockey
Journal:  Am J Bot       Date:  2006-04       Impact factor: 3.844

8.  Establishing a fossil record for the perianthless Piperales: Saururus tuckerae sp. nov. (Saururaceae) from the Middle Eocene Princeton Chert.

Authors:  Selena Y Smith; Ruth A Stockey
Journal:  Am J Bot       Date:  2007-10       Impact factor: 3.844

9.  Fossil cyclanthus (cyclanthaceae, pandanales) from the eocene of Germany and England.

Authors:  Selena Y Smith; Margaret E Collinson; Paula J Rudall
Journal:  Am J Bot       Date:  2008-06       Impact factor: 3.844

10.  Potomacanthus lobatus gen. et sp. nov., a new flower of probable Lauraceae from the Early Cretaceous (Early to Middle Albian) of eastern North America.

Authors:  Maria von Balthazar; Kaj Raunsgaard Pedersen; Peter R Crane; Marco Stampanoni; Else Marie Friis
Journal:  Am J Bot       Date:  2007-12       Impact factor: 3.844

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  14 in total

1.  Staminate flower of Prunus s. l. (Rosaceae) from Eocene Rovno amber (Ukraine).

Authors:  Dmitry D Sokoloff; Michael S Ignatov; Margarita V Remizowa; Maxim S Nuraliev; Vladimir Blagoderov; Amin Garbout; Evgeny E Perkovsky
Journal:  J Plant Res       Date:  2018-07-21       Impact factor: 2.629

Review 2.  The early evolution of land plants, from fossils to genomics: a commentary on Lang (1937) 'On the plant-remains from the Downtonian of England and Wales'.

Authors:  Dianne Edwards; Paul Kenrick
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-04-19       Impact factor: 6.237

3.  Trace elemental imaging of rare earth elements discriminates tissues at microscale in flat fossils.

Authors:  Pierre Gueriau; Cristian Mocuta; Didier B Dutheil; Serge X Cohen; Dominique Thiaudière; Sylvain Charbonnier; Gaël Clément; Loïc Bertrand
Journal:  PLoS One       Date:  2014-01-29       Impact factor: 3.240

4.  X-ray Synchrotron Microtomography of a silicified Jurassic Cheirolepidiaceae (Conifer) cone: histology and morphology of Pararaucaria collinsonae sp. nov.

Authors:  David C Steart; Alan R T Spencer; Russell J Garwood; Jason Hilton; Martin C Munt; John Needham; Paul Kenrick
Journal:  PeerJ       Date:  2014-10-23       Impact factor: 2.984

5.  Species diversity driven by morphological and ecological disparity: a case study of comparative seed morphology and anatomy across a large monocot order.

Authors:  John C Benedict; Selena Y Smith; Chelsea D Specht; Margaret E Collinson; Jana Leong-Škorničková; Dilworth Y Parkinson; Federica Marone
Journal:  AoB Plants       Date:  2016-10-27       Impact factor: 3.276

6.  Identification of ginseng root using quantitative X-ray microtomography.

Authors:  Linlin Ye; Yanling Xue; Yudan Wang; Juncheng Qi; Tiqiao Xiao
Journal:  J Ginseng Res       Date:  2016-06-09       Impact factor: 6.060

Review 7.  Open data and digital morphology.

Authors:  Thomas G Davies; Imran A Rahman; Stephan Lautenschlager; John A Cunningham; Robert J Asher; Paul M Barrett; Karl T Bates; Stefan Bengtson; Roger B J Benson; Doug M Boyer; José Braga; Jen A Bright; Leon P A M Claessens; Philip G Cox; Xi-Ping Dong; Alistair R Evans; Peter L Falkingham; Matt Friedman; Russell J Garwood; Anjali Goswami; John R Hutchinson; Nathan S Jeffery; Zerina Johanson; Renaud Lebrun; Carlos Martínez-Pérez; Jesús Marugán-Lobón; Paul M O'Higgins; Brian Metscher; Maëva Orliac; Timothy B Rowe; Martin Rücklin; Marcelo R Sánchez-Villagra; Neil H Shubin; Selena Y Smith; J Matthias Starck; Chris Stringer; Adam P Summers; Mark D Sutton; Stig A Walsh; Vera Weisbecker; Lawrence M Witmer; Stephen Wroe; Zongjun Yin; Emily J Rayfield; Philip C J Donoghue
Journal:  Proc Biol Sci       Date:  2017-04-12       Impact factor: 5.349

8.  BEYOND THE PRINT-VIRTUAL PALEONTOLOGY IN SCIENCE PUBLISHING, OUTREACH, AND EDUCATION.

Authors:  Stephan Lautenschlager; Martin Rücklin
Journal:  J Paleontol       Date:  2014-07-01       Impact factor: 1.471

9.  Applying microCT and 3D visualization to Jurassic silicified conifer seed cones: A virtual advantage over thin-sectioning.

Authors:  Carole T Gee
Journal:  Appl Plant Sci       Date:  2013-11-07       Impact factor: 1.936

10.  Reinvestigating an enigmatic Late Cretaceous monocot: morphology, taxonomy, and biogeography of Viracarpon.

Authors:  Kelly K S Matsunaga; Selena Y Smith; Steven R Manchester; Dashrath Kapgate; Deepak Ramteke; Amin Garbout; Herminso Villarraga-Gómez
Journal:  PeerJ       Date:  2018-04-06       Impact factor: 2.984

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