Literature DB >> 19569617

Demixing transition of the aqueous solution of amyloidogenic peptides: a REMD simulation study.

Gurpreet Singh1, Ivan Brovchenko, Alla Oleinikova, Roland Winter.   

Abstract

The aggregation of amyloidogenic peptides in liquid water is studied at various temperatures by replica exchange molecular dynamics (REMD) simulations. The formation of a peptide aggregate upon decreasing the temperature reveals features typical for a first-order demixing phase transition, which is smeared out due to the finite size of the simulation box. Various properties of the ensemble of peptides were used to describe the temperature-induced demixing phase transition, which was found to occur at about 375 K. The hydrational and volumetric properties of the peptides and their aggregates are analyzed.

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Year:  2009        PMID: 19569617     DOI: 10.1021/jp901144v

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  Nucleation of β-rich oligomers and β-barrels in the early aggregation of human islet amyloid polypeptide.

Authors:  Yunxiang Sun; Aleksandr Kakinen; Yanting Xing; Emily H Pilkington; Thomas P Davis; Pu Chun Ke; Feng Ding
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2018-11-28       Impact factor: 5.187

2.  Reduced atomic pair-interaction design (RAPID) model for simulations of proteins.

Authors:  Boris Ni; Andrij Baumketner
Journal:  J Chem Phys       Date:  2013-02-14       Impact factor: 3.488

3.  Conformational distribution and α-helix to β-sheet transition of human amylin fragment dimer.

Authors:  Ruxi Qi; Yin Luo; Buyong Ma; Ruth Nussinov; Guanghong Wei
Journal:  Biomacromolecules       Date:  2013-12-16       Impact factor: 6.988

4.  Modulation of p53 binding to MDM2: computational studies reveal important roles of Tyr100.

Authors:  Shubhra Ghosh Dastidar; David P Lane; Chandra S Verma
Journal:  BMC Bioinformatics       Date:  2009-12-03       Impact factor: 3.169

5.  Conformational Ensemble of hIAPP Dimer: Insight into the Molecular Mechanism by which a Green Tea Extract inhibits hIAPP Aggregation.

Authors:  Yuxiang Mo; Jiangtao Lei; Yunxiang Sun; Qingwen Zhang; Guanghong Wei
Journal:  Sci Rep       Date:  2016-09-13       Impact factor: 4.379

  5 in total

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