Literature DB >> 19569098

Analytical and statistical approaches to metabolomics research.

Haleem J Issaq1, Que N Van, Timothy J Waybright, Gary M Muschik, Timothy D Veenstra.   

Abstract

Metabolomics, the global profiling of metabolites in different living systems, has experienced a rekindling of interest partially due to the improved detection capabilities of the instrumental techniques currently being used in this area of biomedical research. The analytical methods of choice for the analysis of metabolites in search of disease biomarkers in biological specimens, and for the study of various low molecular weight metabolic pathways include NMR spectroscopy, GC/MS, CE/MS, and HPLC/MS. Global metabolite analysis and profiling of two different sets of data results in a plethora of data that is difficult to manage or interpret manually because of their subtle differences. Multivariate statistical methods and pattern-recognition programs were developed to handle the acquired data and to search for the discriminating features between data acquired from two sample sets, healthy and diseased. Metabolomics have been used in toxicology, plant physiology, and biomedical research. In this paper, we discuss various aspects of metabolomic research including sample collection, handling, storage, requirements for sample analysis, peak alignment, data interpretation using statistical approaches, metabolite identification, and finally recommendations for successful analysis.

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Year:  2009        PMID: 19569098     DOI: 10.1002/jssc.200900152

Source DB:  PubMed          Journal:  J Sep Sci        ISSN: 1615-9306            Impact factor:   3.645


  43 in total

1.  Metabolic profiling for the detection of bladder cancer.

Authors:  Que N Van; Timothy D Veenstra; Haleem J Issaq
Journal:  Curr Urol Rep       Date:  2011-02       Impact factor: 3.092

Review 2.  Analytical approaches to metabolomics and applications to systems biology.

Authors:  Jeffrey H Wang; Jaeman Byun; Subramaniam Pennathur
Journal:  Semin Nephrol       Date:  2010-09       Impact factor: 5.299

Review 3.  Gene expression analysis, proteomics, and network discovery.

Authors:  Sacha Baginsky; Lars Hennig; Philip Zimmermann; Wilhelm Gruissem
Journal:  Plant Physiol       Date:  2009-12-11       Impact factor: 8.340

4.  NMR-based metabolomics of mammalian cell and tissue cultures.

Authors:  Nelly Aranibar; Michael Borys; Nancy A Mackin; Van Ly; Nicholas Abu-Absi; Susan Abu-Absi; Matthias Niemitz; Bernhard Schilling; Zheng Jian Li; Barry Brock; Reb J Russell; Adrienne Tymiak; Michael D Reily
Journal:  J Biomol NMR       Date:  2011-03-04       Impact factor: 2.835

5.  Global urinary metabolic profiling of the osteonecrosis of the femoral head based on UPLC-QTOF/MS.

Authors:  Gang Yang; Gang Zhao; Jian Zhang; Sichuan Gao; Tingmei Chen; Shijia Ding; Yun Zhu
Journal:  Metabolomics       Date:  2019-02-20       Impact factor: 4.290

Review 6.  Metabolomics in the developmental origins of obesity and its cardiometabolic consequences.

Authors:  M F Hivert; W Perng; S M Watkins; C S Newgard; L C Kenny; B S Kristal; M E Patti; E Isganaitis; D L DeMeo; E Oken; M W Gillman
Journal:  J Dev Orig Health Dis       Date:  2015-01-29       Impact factor: 2.401

7.  Global metabolic profiling of animal and human tissues via UPLC-MS.

Authors:  Elizabeth J Want; Perrine Masson; Filippos Michopoulos; Ian D Wilson; Georgios Theodoridis; Robert S Plumb; John Shockcor; Neil Loftus; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2012-12-06       Impact factor: 13.491

8.  Analyzing LC/MS metabolic profiling data in the context of existing metabolic networks.

Authors:  Tianwei Yu; Yun Bai
Journal:  Curr Metabolomics       Date:  2013-01-01

9.  Improving peak detection in high-resolution LC/MS metabolomics data using preexisting knowledge and machine learning approach.

Authors:  Tianwei Yu; Dean P Jones
Journal:  Bioinformatics       Date:  2014-07-07       Impact factor: 6.937

10.  Proteomic analysis of chloroplast-to-chromoplast transition in tomato reveals metabolic shifts coupled with disrupted thylakoid biogenesis machinery and elevated energy-production components.

Authors:  Cristina Barsan; Mohamed Zouine; Elie Maza; Wanping Bian; Isabel Egea; Michel Rossignol; David Bouyssie; Carole Pichereaux; Eduardo Purgatto; Mondher Bouzayen; Alain Latché; Jean-Claude Pech
Journal:  Plant Physiol       Date:  2012-08-20       Impact factor: 8.340

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