Literature DB >> 19568788

Brought to life: targeted activation of enzyme function with small molecules.

Anthony C Bishop1, Vincent L Chen.   

Abstract

Cell-permeable small molecules that are capable of activating particular enzymes would be invaluable tools for studying protein function in complex cell-signaling cascades. But, is it feasible to identify compounds that allow chemical-biology researchers to activate specific enzymes in a cellular context? In this review, we describe some recent advances in achieving targeted enzyme activation with small molecules. In addition to surveying progress in the identification and targeting of enzymes that contain natural allosteric-activation sites, we focus on recently developed protein-engineering strategies that allow researchers to render an enzyme of interest "activatable" by a pre-chosen compound. Three distinct strategies for targeting an engineered enzyme are discussed: direct chemical "rescue" of an intentionally inactivated enzyme, activation of an enzyme by targeting a de novo small-molecule-binding site, and the generation of activatable enzymes via fusion of target enzymes to previously characterized small-molecule-binding domains.

Year:  2008        PMID: 19568788      PMCID: PMC2682351          DOI: 10.1007/s12154-008-0012-4

Source DB:  PubMed          Journal:  J Chem Biol        ISSN: 1864-6158


  51 in total

1.  Multicolor and electron microscopic imaging of connexin trafficking.

Authors:  Guido Gaietta; Thomas J Deerinck; Stephen R Adams; James Bouwer; Oded Tour; Dale W Laird; Gina E Sosinsky; Roger Y Tsien; Mark H Ellisman
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

2.  Activation of c-Abl kinase activity and transformation by a chemical inducer of dimerization.

Authors:  K M Smith; R A Van Etten
Journal:  J Biol Chem       Date:  2001-04-24       Impact factor: 5.157

3.  Ligand interaction scan: a general method for engineering ligand-sensitive protein alleles.

Authors:  Oran Erster; Miriam Eisenstein; Mordechai Liscovitch
Journal:  Nat Methods       Date:  2007-04-22       Impact factor: 28.547

4.  Chemical rescue of a mutant enzyme in living cells.

Authors:  Yingfeng Qiao; Henrik Molina; Akhilesh Pandey; Jin Zhang; Philip A Cole
Journal:  Science       Date:  2006-03-03       Impact factor: 47.728

5.  Transcriptional up-regulation in cells mediated by a small molecule.

Authors:  Steven P Rowe; Ryan J Casey; Brian B Brennan; Sara J Buhrlage; Anna K Mapp
Journal:  J Am Chem Soc       Date:  2007-08-11       Impact factor: 15.419

6.  Imidazole-induced cell death, associated with intracellular acidification, caspase-3 activation, DFF-45 cleavage, but not oligonucleosomal DNA fragmentation.

Authors:  K Iguchi; S Usui; R Ishida; K Hirano
Journal:  Apoptosis       Date:  2002-12       Impact factor: 4.677

7.  Synthetic activation of caspases: artificial death switches.

Authors:  R A MacCorkle; K W Freeman; D M Spencer
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

8.  Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan.

Authors:  Konrad T Howitz; Kevin J Bitterman; Haim Y Cohen; Dudley W Lamming; Siva Lavu; Jason G Wood; Robert E Zipkin; Phuong Chung; Anne Kisielewski; Li-Li Zhang; Brandy Scherer; David A Sinclair
Journal:  Nature       Date:  2003-08-24       Impact factor: 49.962

Review 9.  Glucokinase activators: molecular tools for studying the physiology of insulin-secreting cells.

Authors:  D Johnson; R M Shepherd; D Gill; T Gorman; D M Smith; M J Dunne
Journal:  Biochem Soc Trans       Date:  2007-11       Impact factor: 5.407

Review 10.  Glucokinase activators in diabetes management.

Authors:  Matthew Coghlan; Brendan Leighton
Journal:  Expert Opin Investig Drugs       Date:  2008-02       Impact factor: 6.206

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  14 in total

1.  Palladium-triggered deprotection chemistry for protein activation in living cells.

Authors:  Jie Li; Juntao Yu; Jingyi Zhao; Jie Wang; Siqi Zheng; Shixian Lin; Long Chen; Maiyun Yang; Shang Jia; Xiaoyu Zhang; Peng R Chen
Journal:  Nat Chem       Date:  2014-03-16       Impact factor: 24.427

2.  Turning enzymes ON with small molecules.

Authors:  Julie A Zorn; James A Wells
Journal:  Nat Chem Biol       Date:  2010-03       Impact factor: 15.040

3.  Antibacterial photosensitization through activation of coproporphyrinogen oxidase.

Authors:  Matthew C Surdel; Dennis J Horvath; Lisa J Lojek; Audra R Fullen; Jocelyn Simpson; Brendan F Dutter; Kenneth J Salleng; Jeremy B Ford; J Logan Jenkins; Raju Nagarajan; Pedro L Teixeira; Matthew Albertolle; Ivelin S Georgiev; E Duco Jansen; Gary A Sulikowski; D Borden Lacy; Harry A Dailey; Eric P Skaar
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

4.  Direct Chemical Activation of a Rationally Engineered Signaling Enzyme.

Authors:  Cynthia M Chio; Karen W Cheng; Anthony C Bishop
Journal:  Chembiochem       Date:  2015-06-30       Impact factor: 3.164

5.  Labeling: palladium brings proteins to life.

Authors:  Kun Qian; Yujun George Zheng
Journal:  Nat Chem Biol       Date:  2014-05       Impact factor: 15.040

6.  2C-Methyl-d-erythritol 4-phosphate enhances and sustains cyclodiphosphate synthase IspF activity.

Authors:  J Kipchirchir Bitok; Caren Freel Meyers
Journal:  ACS Chem Biol       Date:  2012-08-06       Impact factor: 5.100

7.  Chemical rescue of protein tyrosine phosphatase activity.

Authors:  Vincent L Chen; Anthony C Bishop
Journal:  Chem Commun (Camb)       Date:  2009-11-18       Impact factor: 6.222

8.  Identification and characterization of novel inhibitors of Mammalian aspartyl aminopeptidase.

Authors:  Yuanyuan Chen; Hong Tang; William Seibel; Ruben Papoian; Ki Oh; Xiaoyu Li; Jianye Zhang; Marcin Golczak; Krzysztof Palczewski; Philip D Kiser
Journal:  Mol Pharmacol       Date:  2014-06-09       Impact factor: 4.436

9.  Precise Probing of Residue Roles by Post-Translational β,γ-C,N Aza-Michael Mutagenesis in Enzyme Active Sites.

Authors:  Jitka Dadová; Kuan-Jung Wu; Patrick G Isenegger; James C Errey; Gonçalo J L Bernardes; Justin M Chalker; Lluís Raich; Carme Rovira; Benjamin G Davis
Journal:  ACS Cent Sci       Date:  2017-11-13       Impact factor: 14.553

10.  High throughput cell-based assay for identification of glycolate oxidase inhibitors as a potential treatment for Primary Hyperoxaluria Type 1.

Authors:  Mengqiao Wang; Miao Xu; Yan Long; Sonia Fargue; Noel Southall; Xin Hu; John C McKew; Christopher J Danpure; Wei Zheng
Journal:  Sci Rep       Date:  2016-09-27       Impact factor: 4.379

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