Literature DB >> 19567276

Proteome profile of functional mitochondria from human skeletal muscle using one-dimensional gel electrophoresis and HPLC-ESI-MS/MS.

Natalie Lefort1, Zhengping Yi, Benjamin Bowen, Brian Glancy, Eleanna A De Filippis, Rebekka Mapes, Hyonson Hwang, Charles R Flynn, Wayne T Willis, Anthony Civitarese, Kurt Højlund, Lawrence J Mandarino.   

Abstract

Mitochondria can be isolated from skeletal muscle in a manner that preserves tightly coupled bioenergetic function in vitro. The purpose of this study was to characterize the composition of such preparations using a proteomics approach. Mitochondria isolated from human vastus lateralis biopsies were functional as evidenced by their response to carbohydrate and fat-derived fuels. Using one-dimensional gel electrophoresis and HPLC-ESI-MS/MS, 823 unique proteins were detected, and 487 of these were assigned to the mitochondrion, including the newly characterized SIRT5, MitoNEET and RDH13. Proteins detected included 9 of the 13 mitochondrial DNA-encoded proteins and 86 of 104 electron transport chain (ETC) and ETC-related proteins. In addition, 59 of 78 proteins of the 55S mitoribosome, several TIM and TOM proteins and cell death proteins were present. This study presents an efficient method for future qualitative assessments of proteins from functional isolated mitochondria from small samples of healthy and diseased skeletal muscle.

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Year:  2009        PMID: 19567276      PMCID: PMC2774790          DOI: 10.1016/j.jprot.2009.06.011

Source DB:  PubMed          Journal:  J Proteomics        ISSN: 1874-3919            Impact factor:   4.044


  77 in total

1.  A model for random sampling and estimation of relative protein abundance in shotgun proteomics.

Authors:  Hongbin Liu; Rovshan G Sadygov; John R Yates
Journal:  Anal Chem       Date:  2004-07-15       Impact factor: 6.986

2.  MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.

Authors:  Chittibabu Guda; Eoin Fahy; Shankar Subramaniam
Journal:  Bioinformatics       Date:  2004-03-22       Impact factor: 6.937

3.  Up-regulation of plasma membrane-associated redox activities in neuronal cells lacking functional mitochondria.

Authors:  Dong-Hoon Hyun; Nicole D Hunt; Scott S Emerson; Joe O Hernandez; Mark P Mattson; Rafael de Cabo
Journal:  J Neurochem       Date:  2007-01-22       Impact factor: 5.372

4.  Identification of a novel mitochondrial complex containing mitofusin 2 and stomatin-like protein 2.

Authors:  Petr Hájek; Anne Chomyn; Giuseppe Attardi
Journal:  J Biol Chem       Date:  2006-11-22       Impact factor: 5.157

5.  Differentiation-dependent expression of Adhfe1 in adipogenesis.

Authors:  Ji Young Kim; Kristin S Tillison; Shengli Zhou; Jun Ho Lee; Cynthia M Smas
Journal:  Arch Biochem Biophys       Date:  2007-05-07       Impact factor: 4.013

6.  The mitochondrial inner membrane protein mitofilin exists as a complex with SAM50, metaxins 1 and 2, coiled-coil-helix coiled-coil-helix domain-containing protein 3 and 6 and DnaJC11.

Authors:  Jing Xie; Michael F Marusich; Puneet Souda; Julian Whitelegge; Roderick A Capaldi
Journal:  FEBS Lett       Date:  2007-06-27       Impact factor: 4.124

7.  Quantitative and qualitative adaptation of human skeletal muscle mitochondria to hypoxic compared with normoxic training at the same relative work rate.

Authors:  L Bakkman; K Sahlin; H-C Holmberg; M Tonkonogi
Journal:  Acta Physiol (Oxf)       Date:  2007-05-22       Impact factor: 6.311

8.  Patients with type 2 diabetes have normal mitochondrial function in skeletal muscle.

Authors:  R Boushel; E Gnaiger; P Schjerling; M Skovbro; R Kraunsøe; F Dela
Journal:  Diabetologia       Date:  2007-02-15       Impact factor: 10.122

Review 9.  Mammalian mitochondrial nucleoids: organizing an independently minded genome.

Authors:  Ian J Holt; Jiuya He; Chih-Chieh Mao; Jerome D Boyd-Kirkup; Peter Martinsson; Hiroshi Sembongi; Aurelio Reyes; Johannes N Spelbrink
Journal:  Mitochondrion       Date:  2007-07-04       Impact factor: 4.160

10.  Muscle mitochondrial ATP synthesis and glucose transport/phosphorylation in type 2 diabetes.

Authors:  Julia Szendroedi; Albrecht I Schmid; Marek Chmelik; Christian Toth; Attila Brehm; Martin Krssak; Peter Nowotny; Michael Wolzt; Werner Waldhausl; Michael Roden
Journal:  PLoS Med       Date:  2007-05       Impact factor: 11.069

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  31 in total

Review 1.  Proteomic responses of skeletal and cardiac muscle to exercise.

Authors:  Jatin G Burniston; Eric P Hoffman
Journal:  Expert Rev Proteomics       Date:  2011-06       Impact factor: 3.940

2.  AMASS: a database for investigating protein structures.

Authors:  Clinton J Mielke; Lawrence J Mandarino; Valentin Dinu
Journal:  Bioinformatics       Date:  2014-02-03       Impact factor: 6.937

3.  Adenine nucleotide translocase is acetylated in vivo in human muscle: Modeling predicts a decreased ADP affinity and altered control of oxidative phosphorylation.

Authors:  Clinton Mielke; Natalie Lefort; Carrie G McLean; Jeanine M Cordova; Paul R Langlais; Andrew J Bordner; Jerez A Te; S Banu Ozkan; Wayne T Willis; Lawrence J Mandarino
Journal:  Biochemistry       Date:  2014-06-09       Impact factor: 3.162

4.  Effect of exercise on the skeletal muscle proteome in patients with type 2 diabetes.

Authors:  Sophie E Hussey; Carrie G Sharoff; Andrew Garnham; Zhengping Yi; Benjamin P Bowen; Lawrence J Mandarino; Mark Hargreaves
Journal:  Med Sci Sports Exerc       Date:  2013-06       Impact factor: 5.411

5.  FAT/CD36 is localized in sarcolemma and in vesicle-like structures in subsarcolemma regions but not in mitochondria.

Authors:  Jacob Jeppesen; Martin Mogensen; Clara Prats; Kent Sahlin; Klavs Madsen; Bente Kiens
Journal:  J Lipid Res       Date:  2009-12-18       Impact factor: 5.922

6.  Phosphoproteome analysis of functional mitochondria isolated from resting human muscle reveals extensive phosphorylation of inner membrane protein complexes and enzymes.

Authors:  Xiaolu Zhao; Ileana R León; Steffen Bak; Martin Mogensen; Krzysztof Wrzesinski; Kurt Højlund; Ole Nørregaard Jensen
Journal:  Mol Cell Proteomics       Date:  2010-09-10       Impact factor: 5.911

Review 7.  Mammalian alpha beta hydrolase domain (ABHD) proteins: Lipid metabolizing enzymes at the interface of cell signaling and energy metabolism.

Authors:  Caleb C Lord; Gwynneth Thomas; J Mark Brown
Journal:  Biochim Biophys Acta       Date:  2013-01-14

8.  In vivo phosphoproteome of human skeletal muscle revealed by phosphopeptide enrichment and HPLC-ESI-MS/MS.

Authors:  Kurt Højlund; Benjamin P Bowen; Hyonson Hwang; Charles R Flynn; Lohith Madireddy; Thangiah Geetha; Paul Langlais; Christian Meyer; Lawrence J Mandarino; Zhengping Yi
Journal:  J Proteome Res       Date:  2009-11       Impact factor: 4.466

Review 9.  Mitochondrial proteins: from biogenesis to functional networks.

Authors:  Nikolaus Pfanner; Bettina Warscheid; Nils Wiedemann
Journal:  Nat Rev Mol Cell Biol       Date:  2019-05       Impact factor: 94.444

10.  Cancer cell growth and survival as a system-level property sustained by enhanced glycolysis and mitochondrial metabolic remodeling.

Authors:  Lilia Alberghina; Daniela Gaglio; Cecilia Gelfi; Rosa M Moresco; Giancarlo Mauri; Paola Bertolazzi; Cristina Messa; Maria C Gilardi; Ferdinando Chiaradonna; Marco Vanoni
Journal:  Front Physiol       Date:  2012-09-12       Impact factor: 4.566

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