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Literature DB >> 19564846

RNAiCut: automated detection of significant genes from functional genomic screens.

Irene M Kaplow, Rohit Singh, Adam Friedman, Chris Bakal, Norbert Perrimon, Bonnie Berger.

Abstract

Mesh：

Substances：
Insulin

Year: 2009 PMID： 19564846 DOI： 10.1038/nmeth0709-476

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

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5 in total

1. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors: M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal: Nat Genet Date: 2000-05 Impact factor: 38.330

2. The Database of Interacting Proteins: 2004 update.

Authors: Lukasz Salwinski; Christopher S Miller; Adam J Smith; Frank K Pettit; James U Bowie; David Eisenberg
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

3. A functional RNAi screen for regulators of receptor tyrosine kinase and ERK signalling.

Authors: Adam Friedman; Norbert Perrimon
Journal: Nature Date: 2006-11-01 Impact factor: 49.962

4. Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.

Authors: Renate König; Yingyao Zhou; Daniel Elleder; Tracy L Diamond; Ghislain M C Bonamy; Jeffrey T Irelan; Chih-Yuan Chiang; Buu P Tu; Paul D De Jesus; Caroline E Lilley; Shannon Seidel; Amanda M Opaluch; Jeremy S Caldwell; Matthew D Weitzman; Kelli L Kuhen; Sourav Bandyopadhyay; Trey Ideker; Anthony P Orth; Loren J Miraglia; Frederic D Bushman; John A Young; Sumit K Chanda
Journal: Cell Date: 2008-10-03 Impact factor: 41.582

5. BioGRID: a general repository for interaction datasets.

Authors: Chris Stark; Bobby-Joe Breitkreutz; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Mike Tyers
Journal: Nucleic Acids Res Date: 2006-01-01 Impact factor: 16.971

5 in total

19 in total

1. Mining and integration of pathway diagrams from imaging data.

Authors: Sergey Kozhenkov; Michael Baitaluk
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Review 2. RNAi screening: new approaches, understandings, and organisms.

Authors: Stephanie E Mohr; Norbert Perrimon
Journal: Wiley Interdiscip Rev RNA Date: 2011-09-22 Impact factor: 9.957

3. Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks.

Authors: Xiaotu Ma; Ting Chen; Fengzhu Sun
Journal: Brief Bioinform Date: 2013-06-19 Impact factor: 11.622

4. Noise reduction in genome-wide perturbation screens using linear mixed-effect models.

Authors: Danni Yu; John Danku; Ivan Baxter; Sungjin Kim; Olena K Vatamaniuk; David E Salt; Olga Vitek
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Review 5. Evaluation and control of miRNA-like off-target repression for RNA interference.

Authors: Heeyoung Seok; Haejeong Lee; Eun-Sook Jang; Sung Wook Chi
Journal: Cell Mol Life Sci Date: 2017-09-13 Impact factor: 9.261

6. How to understand the cell by breaking it: network analysis of gene perturbation screens.

Authors: Florian Markowetz
Journal: PLoS Comput Biol Date: 2010-02-26 Impact factor: 4.475

7. Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets.

Authors: Hsiang Ho; Tijana Milenković; Vesna Memisević; Jayavani Aruri; Natasa Przulj; Anand K Ganesan
Journal: BMC Syst Biol Date: 2010-06-15