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Literature DB >> 19563125

Assays used to study the DNA replication checkpoint in fission yeast.

Eishi Noguchi¹, Alison B Ansbach, Chiaki Noguchi, Paul Russell.

Abstract

The DNA replication checkpoint, also known as the intra-S or S-phase checkpoint, plays a central role in ensuring the accuracy of DNA replication. When replication is impeded by DNA damage or other conditions, this checkpoint delays cell cycle progression and coordinates resumption of replication with DNA repair pathways. One of its critical functions is to stabilize stalled replication forks in a replication-competent state, presumably by maintaining proper assembly of replisome components and preserving DNA structures. Here we describe a series of assays used to study the replication checkpoint. These assays allow us to investigate the specific functions of proteins involved in the replication checkpoint in fission yeast.

Entities: Chemical Disease Gene Species

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Year: 2009 PMID： 19563125 PMCID： PMC3582217 DOI： 10.1007/978-1-60327-815-7_28

Source DB: PubMed Journal: Methods Mol Biol ISSN： 1064-3745

34 in total

Review 1. Toward maintaining the genome: DNA damage and replication checkpoints.

Authors: Kara A Nyberg; Rhett J Michelson; Charles W Putnam; Ted A Weinert
Journal: Annu Rev Genet Date: 2002-06-11 Impact factor: 16.830

Review 2. Checking on the fork: the DNA-replication stress-response pathway.

Authors: Alexander J Osborn; Stephen J Elledge; Lee Zou
Journal: Trends Cell Biol Date: 2002-11 Impact factor: 20.808

Review 3. When checkpoints fail.

Authors: A G Paulovich; D P Toczyski; L H Hartwell
Journal: Cell Date: 1997-02-07 Impact factor: 41.582

4. S-phase-specific activation of Cds1 kinase defines a subpathway of the checkpoint response in Schizosaccharomyces pombe.

Authors: H D Lindsay; D J Griffiths; R J Edwards; P U Christensen; J M Murray; F Osman; N Walworth; A M Carr
Journal: Genes Dev Date: 1998-02-01 Impact factor: 11.361

5. The fission yeast rad22 gene, having a function in mating-type switching and repair of DNA damages, encodes a protein homolog to Rad52 of Saccharomyces cerevisiae.

Authors: K Ostermann; A Lorentz; H Schmidt
Journal: Nucleic Acids Res Date: 1993-12-25 Impact factor: 16.971

6. Fission yeast chk1 protein kinase links the rad checkpoint pathway to cdc2.

Authors: N Walworth; S Davey; D Beach
Journal: Nature Date: 1993-05-27 Impact factor: 49.962

7. Swi1 prevents replication fork collapse and controls checkpoint kinase Cds1.

Authors: Eishi Noguchi; Chiaki Noguchi; Li-Lin Du; Paul Russell
Journal: Mol Cell Biol Date: 2003-11 Impact factor: 4.272

8. Swi1 and Swi3 are components of a replication fork protection complex in fission yeast.

Authors: Eishi Noguchi; Chiaki Noguchi; W Hayes McDonald; John R Yates; Paul Russell
Journal: Mol Cell Biol Date: 2004-10 Impact factor: 4.272

9. Replication checkpoint protein Mrc1 is regulated by Rad3 and Tel1 in fission yeast.

Authors: Hui Zhao; Katsunori Tanaka; Eishi Nogochi; Chiaki Nogochi; Paul Russell
Journal: Mol Cell Biol Date: 2003-11 Impact factor: 4.272

10. A central role for DNA replication forks in checkpoint activation and response.

Authors: José Antonio Tercero; Maria Pia Longhese; John F X Diffley
Journal: Mol Cell Date: 2003-05 Impact factor: 17.970

11 in total

1. Discovery of genes involved in mitosis, cell division, cell wall integrity and chromosome segregation through construction of Schizosaccharomyces pombe deletion strains.

Authors: Jun-Song Chen; Janel R Beckley; Liping Ren; Anna Feoktistova; Michael A Jensen; Nicholas Rhind; Kathleen L Gould
Journal: Yeast Date: 2016-06-29 Impact factor: 3.239

2. The double-bromodomain proteins Bdf1 and Bdf2 modulate chromatin structure to regulate S-phase stress response in Schizosaccharomyces pombe.

Authors: Mikael V Garabedian; Chiaki Noguchi; Melissa A Ziegler; Mukund M Das; Tanu Singh; Logan J Harper; Adam R Leman; Lyne Khair; Bettina A Moser; Toru M Nakamura; Eishi Noguchi
Journal: Genetics Date: 2011-11-17 Impact factor: 4.562

3. Checkpoint-dependent and -independent roles of Swi3 in replication fork recovery and sister chromatid cohesion in fission yeast.

Authors: Jordan B Rapp; Chiaki Noguchi; Mukund M Das; Lisa K Wong; Alison B Ansbach; Allyson M Holmes; Benoit Arcangioli; Eishi Noguchi
Journal: PLoS One Date: 2010-10-12 Impact factor: 3.240

4. Genetic controls of DNA damage avoidance in response to acetaldehyde in fission yeast.

Authors: Chiaki Noguchi; Grant Grothusen; Vinesh Anandarajan; Marta Martínez-Lage García; Daniel Terlecky; Krysten Corzo; Katsunori Tanaka; Hiroshi Nakagawa; Eishi Noguchi
Journal: Cell Cycle Date: 2016-09-29 Impact factor: 4.534

5. Role of swi7H4 mutant allele of DNA polymerase α in the DNA damage checkpoint response.

Authors: Saman Khan; Shakil Ahmed
Journal: PLoS One Date: 2015-03-30 Impact factor: 3.240

6. Identification of new players in cell division, DNA damage response, and morphogenesis through construction of Schizosaccharomyces pombe deletion strains.

Authors: Jun-Song Chen; Janel R Beckley; Nathan A McDonald; Liping Ren; MariaSanta Mangione; Sylvia J Jang; Zachary C Elmore; Nicole Rachfall; Anna Feoktistova; Christine M Jones; Alaina H Willet; Rodrigo Guillen; Danny A Bitton; Jürg Bähler; Michael A Jensen; Nick Rhind; Kathleen L Gould
Journal: G3 (Bethesda) Date: 2014-12-31 Impact factor: 3.154

7. DNA polymerase α (swi7) and the flap endonuclease Fen1 (rad2) act together in the S-phase alkylation damage response in S. pombe.

Authors: Milana Koulintchenko; Sonya Vengrova; Trevor Eydmann; Prakash Arumugam; Jacob Z Dalgaard
Journal: PLoS One Date: 2012-10-11 Impact factor: 3.240