| Literature DB >> 19548705 |
Ruslan L Davidchack1, Richard Handel, M V Tretyakov.
Abstract
We present a new method for isothermal rigid body simulations using the quaternion representation and Langevin dynamics. It can be combined with the traditional Langevin or gradient (Brownian) dynamics for the translational degrees of freedom to correctly sample the canonical distribution in a simulation of rigid molecules. We propose simple, quasisymplectic second-order numerical integrators and test their performance on the TIP4P model of water. We also investigate the optimal choice of thermostat parameters.Entities:
Year: 2009 PMID: 19548705 DOI: 10.1063/1.3149788
Source DB: PubMed Journal: J Chem Phys ISSN: 0021-9606 Impact factor: 3.488