Literature DB >> 19543200

Large volume (20L+) filtration of coastal seawater samples.

David A Walsh1, Elena Zaikova, Steven J Hallam.   

Abstract

The workflow begins with the collection of coastal marine waters for downstream microbial community, nutrient and trace gas analyses. For this method, samples were collected from the deck of the HMS John Strickland operating in Saanich Inlet. This video documents large volume (> or = 20 L) filtration of microbial biomass, ranging between 0.22 microm and 2.7 microm in diameter, from the water column. Two 20 L samples can be filtered simultaneously using a single pump unit equipped with four rotating heads. Filtration is done in the field on extended trips, or immediately upon return for day trips. It is important to record the amount of water passing through each sterivex filter unit. To prevent biofilm formation between sampling trips, all filtration equipment must be rinsed with dilute HCl and deionized water and autoclaved immediately after use. This procedure will take approximately 5 hours plus an additional hour for clean up.

Entities:  

Mesh:

Year:  2009        PMID: 19543200      PMCID: PMC3253652          DOI: 10.3791/1161

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  11 in total

1.  Effect of oxygen minimum zone formation on communities of marine protists.

Authors:  William Orsi; Young C Song; Steven Hallam; Virginia Edgcomb
Journal:  ISME J       Date:  2012-03-08       Impact factor: 10.302

2.  Large insert environmental genomic library production.

Authors:  Marcus Taupp; Sangwon Lee; Alyse Hawley; Jinshu Yang; Steven J Hallam
Journal:  J Vis Exp       Date:  2009-09-23       Impact factor: 1.355

3.  Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA.

Authors:  Masaki Miya; Toshifumi Minamoto; Hiroki Yamanaka; Shin-Ichiro Oka; Keiichi Sato; Satoshi Yamamoto; Tetsuya Sado; Hideyuki Doi
Journal:  J Vis Exp       Date:  2016-11-25       Impact factor: 1.355

4.  Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters.

Authors:  Laura A Bristow; Tage Dalsgaard; Laura Tiano; Daniel B Mills; Anthony D Bertagnolli; Jody J Wright; Steven J Hallam; Osvaldo Ulloa; Donald E Canfield; Niels Peter Revsbech; Bo Thamdrup
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

5.  Standard filtration practices may significantly distort planktonic microbial diversity estimates.

Authors:  Cory C Padilla; Sangita Ganesh; Shelby Gantt; Alex Huhman; Darren J Parris; Neha Sarode; Frank J Stewart
Journal:  Front Microbiol       Date:  2015-06-02       Impact factor: 5.640

6.  A compendium of multi-omic sequence information from the Saanich Inlet water column.

Authors:  Alyse K Hawley; Mónica Torres-Beltrán; Elena Zaikova; David A Walsh; Andreas Mueller; Melanie Scofield; Sam Kheirandish; Chris Payne; Larysa Pakhomova; Maya Bhatia; Olena Shevchuk; Esther A Gies; Diane Fairley; Stephanie A Malfatti; Angela D Norbeck; Heather M Brewer; Ljiljana Pasa-Tolic; Tijana Glavina Del Rio; Curtis A Suttle; Susannah Tringe; Steven J Hallam
Journal:  Sci Data       Date:  2017-10-31       Impact factor: 6.444

7.  Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.

Authors:  Elke Allers; Jody J Wright; Kishori M Konwar; Charles G Howes; Erica Beneze; Steven J Hallam; Matthew B Sullivan
Journal:  ISME J       Date:  2012-11-15       Impact factor: 10.302

8.  Functional metagenomic investigations of microbial communities in a shallow-sea hydrothermal system.

Authors:  Kai Tang; Keshao Liu; Nianzhi Jiao; Yao Zhang; Chen-Tung Arthur Chen
Journal:  PLoS One       Date:  2013-08-06       Impact factor: 3.240

9.  Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle.

Authors:  Jody J Wright; Keith Mewis; Niels W Hanson; Kishori M Konwar; Kendra R Maas; Steven J Hallam
Journal:  ISME J       Date:  2013-09-12       Impact factor: 10.302

10.  Influence of Filter Pore Size on Composition and Relative Abundance of Bacterial Communities and Select Host-Specific MST Markers in Coastal Waters of Southern Lake Michigan.

Authors:  Muruleedhara N Byappanahalli; Meredith B Nevers; Dawn Shively; Cindy H Nakatsu; Julie L Kinzelman; Mantha S Phanikumar
Journal:  Front Microbiol       Date:  2021-07-15       Impact factor: 5.640

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