Literature DB >> 19542305

An overview of nested genes in eukaryotic genomes.

Anuj Kumar1.   

Abstract

Mesh:

Year:  2009        PMID: 19542305      PMCID: PMC2747821          DOI: 10.1128/EC.00143-09

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


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  74 in total

1.  Overlapping genes in bacteriophage phiX174.

Authors:  B G Barrell; G M Air; C A Hutchison
Journal:  Nature       Date:  1976-11-04       Impact factor: 49.962

2.  Nested genes in the human genome.

Authors:  Peng Yu; Dalong Ma; Mingxu Xu
Journal:  Genomics       Date:  2005-10       Impact factor: 5.736

Review 3.  Genome-wide transcription and the implications for genomic organization.

Authors:  Philipp Kapranov; Aarron T Willingham; Thomas R Gingeras
Journal:  Nat Rev Genet       Date:  2007-05-08       Impact factor: 53.242

4.  Saccharomyces cerevisiae MPT5 and SSD1 function in parallel pathways to promote cell wall integrity.

Authors:  Matt Kaeberlein; Leonard Guarente
Journal:  Genetics       Date:  2002-01       Impact factor: 4.562

5.  Gene within a gene: nested Drosophila genes encode unrelated proteins on opposite DNA strands.

Authors:  S Henikoff; M A Keene; K Fechtel; J W Fristrom
Journal:  Cell       Date:  1986-01-17       Impact factor: 41.582

6.  The Saccharomyces cerevisiae MADS-box transcription factor Rlm1 is a target for the Mpk1 mitogen-activated protein kinase pathway.

Authors:  E Dodou; R Treisman
Journal:  Mol Cell Biol       Date:  1997-04       Impact factor: 4.272

Review 7.  Life with 6000 genes.

Authors:  A Goffeau; B G Barrell; H Bussey; R W Davis; B Dujon; H Feldmann; F Galibert; J D Hoheisel; C Jacq; M Johnston; E J Louis; H W Mewes; Y Murakami; P Philippsen; H Tettelin; S G Oliver
Journal:  Science       Date:  1996-10-25       Impact factor: 47.728

8.  Regulation of the yeast Rlm1 transcription factor by the Mpk1 cell wall integrity MAP kinase.

Authors:  Un Sung Jung; Andrew K Sobering; Martin J Romeo; David E Levin
Journal:  Mol Microbiol       Date:  2002-11       Impact factor: 3.501

9.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

10.  Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy.

Authors:  Neal Crampton; William A Bonass; Jennifer Kirkham; Claudio Rivetti; Neil H Thomson
Journal:  Nucleic Acids Res       Date:  2006-09-29       Impact factor: 16.971

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  29 in total

1.  SapTrap, a Toolkit for High-Throughput CRISPR/Cas9 Gene Modification in Caenorhabditis elegans.

Authors:  Matthew L Schwartz; Erik M Jorgensen
Journal:  Genetics       Date:  2016-02-02       Impact factor: 4.562

2.  An intronic MYLK variant associated with inflammatory lung disease regulates promoter activity of the smooth muscle myosin light chain kinase isoform.

Authors:  Yoo Jeong Han; Shwu-Fan Ma; Michael S Wade; Carlos Flores; Joe G N Garcia
Journal:  J Mol Med (Berl)       Date:  2011-10-21       Impact factor: 4.599

3.  Origin of spliceosomal introns and alternative splicing.

Authors:  Manuel Irimia; Scott William Roy
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-06-02       Impact factor: 10.005

Review 4.  VISTA: Coming of age as a multi-lineage immune checkpoint.

Authors:  M A ElTanbouly; E Schaafsma; R J Noelle; J L Lines
Journal:  Clin Exp Immunol       Date:  2020-02-04       Impact factor: 4.330

5.  Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila.

Authors:  Oriol Calvete; Josefa González; Esther Betrán; Alfredo Ruiz
Journal:  Mol Biol Evol       Date:  2012-02-10       Impact factor: 16.240

6.  The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.

Authors:  Xiao Chen; John R Bracht; Aaron David Goldman; Egor Dolzhenko; Derek M Clay; Estienne C Swart; David H Perlman; Thomas G Doak; Andrew Stuart; Chris T Amemiya; Robert P Sebra; Laura F Landweber
Journal:  Cell       Date:  2014-08-28       Impact factor: 41.582

Review 7.  Origin and evolution of spliceosomal introns.

Authors:  Igor B Rogozin; Liran Carmel; Miklos Csuros; Eugene V Koonin
Journal:  Biol Direct       Date:  2012-04-16       Impact factor: 4.540

8.  Intronic L1 retrotransposons and nested genes cause transcriptional interference by inducing intron retention, exonization and cryptic polyadenylation.

Authors:  Kristel Kaer; Jelena Branovets; Anni Hallikma; Pilvi Nigumann; Mart Speek
Journal:  PLoS One       Date:  2011-10-13       Impact factor: 3.240

9.  The complexity of Rhipicephalus (Boophilus) microplus genome characterised through detailed analysis of two BAC clones.

Authors:  Paula M Moolhuijzen; Ala E Lew-Tabor; Jess A T Morgan; Manuel Rodriguez Valle; Daniel G Peterson; Scot E Dowd; Felix D Guerrero; Matthew I Bellgard; Rudi Appels
Journal:  BMC Res Notes       Date:  2011-07-22

10.  A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF.

Authors:  Lina Zhao; Liguo Liu; Wenchuan Leng; Candong Wei; Qi Jin
Journal:  BMC Genomics       Date:  2011-10-28       Impact factor: 3.969

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