Literature DB >> 19542005

DNA polymerase X from Deinococcus radiodurans implicated in bacterial tolerance to DNA damage is characterized as a short patch base excision repair polymerase.

Nivedita P Khairnar1, Hari S Misra.   

Abstract

The Deinococcus radiodurans R1 genome encodes an X-family DNA repair polymerase homologous to eukaryotic DNA polymerase beta. The recombinant deinococcal polymerase X (PolX) purified from transgenic Escherichia coli showed deoxynucleotidyltransferase activity. Unlike the Klenow fragment of E. coli, this enzyme showed short patch DNA synthesis activity on heteropolymeric DNA substrate. The recombinant enzyme showed 5'-deoxyribose phosphate (5'-dRP) lyase activity and base excision repair function in vitro, with the help of externally supplied glycosylase and AP endonuclease functions. A polX disruption mutant of D. radiodurans expressing 5'-dRP lyase and a truncated polymerase domain was comparatively less sensitive to gamma-radiation than a polX deletion mutant. Both mutants showed higher sensitivity to hydrogen peroxide. Excision repair mutants of E. coli expressing this polymerase showed functional complementation of UV sensitivity. These results suggest the involvement of deinococcal polymerase X in DNA-damage tolerance of D. radiodurans, possibly by contributing to DNA double-strand break repair and base excision repair.

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Year:  2009        PMID: 19542005     DOI: 10.1099/mic.0.029223-0

Source DB:  PubMed          Journal:  Microbiology        ISSN: 1350-0872            Impact factor:   2.777


  13 in total

Review 1.  Targeting DNA polymerase ß for therapeutic intervention.

Authors:  Eva M Goellner; David Svilar; Karen H Almeida; Robert W Sobol
Journal:  Curr Mol Pharmacol       Date:  2012-01       Impact factor: 3.339

2.  Intrinsic apurinic/apyrimidinic (AP) endonuclease activity enables Bacillus subtilis DNA polymerase X to recognize, incise, and further repair abasic sites.

Authors:  Benito Baños; Laurentino Villar; Margarita Salas; Miguel de Vega
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

3.  Phylogenetic analysis and evolutionary origins of DNA polymerase X-family members.

Authors:  Rachelle J Bienstock; William A Beard; Samuel H Wilson
Journal:  DNA Repair (Amst)       Date:  2014-08-09

Review 4.  Oxidative stress resistance in Deinococcus radiodurans.

Authors:  Dea Slade; Miroslav Radman
Journal:  Microbiol Mol Biol Rev       Date:  2011-03       Impact factor: 11.056

5.  Lineage-specific variations in the trigger loop modulate RNA proofreading by bacterial RNA polymerases.

Authors:  Daria Esyunina; Matti Turtola; Danil Pupov; Irina Bass; Saulius Klimašauskas; Georgiy Belogurov; Andrey Kulbachinskiy
Journal:  Nucleic Acids Res       Date:  2016-01-04       Impact factor: 16.971

6.  FrnE, a cadmium-inducible protein in Deinococcus radiodurans, is characterized as a disulfide isomerase chaperone in vitro and for its role in oxidative stress tolerance in vivo.

Authors:  Nivedita P Khairnar; Min-Ho Joe; H S Misra; Sang-Yong Lim; Dong-Ho Kim
Journal:  J Bacteriol       Date:  2013-04-19       Impact factor: 3.490

7.  Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation.

Authors:  Nicolas Beaume; Rajiv Pathak; Vinod Kumar Yadav; Swathi Kota; Hari S Misra; Hemant K Gautam; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

8.  Molecular mechanisms of the whole DNA repair system: a comparison of bacterial and eukaryotic systems.

Authors:  Rihito Morita; Shuhei Nakane; Atsuhiro Shimada; Masao Inoue; Hitoshi Iino; Taisuke Wakamatsu; Kenji Fukui; Noriko Nakagawa; Ryoji Masui; Seiki Kuramitsu
Journal:  J Nucleic Acids       Date:  2010-10-14

9.  The DnaE polymerase from Deinococcus radiodurans features RecA-dependent DNA polymerase activity.

Authors:  Lorenzo Randi; Alessandro Perrone; Mirko Maturi; Fabrizio Dal Piaz; Michela Camerani; Alejandro Hochkoeppler
Journal:  Biosci Rep       Date:  2016-12-05       Impact factor: 3.840

10.  Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia.

Authors:  Peter Vandamme; Charlotte Peeters; Birgit De Smet; Erin P Price; Derek S Sarovich; Deborah A Henry; Trevor J Hird; James E A Zlosnik; Mark Mayo; Jeffrey Warner; Anthony Baker; Bart J Currie; Aurélien Carlier
Journal:  Front Microbiol       Date:  2017-09-06       Impact factor: 5.640

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