Literature DB >> 19541610

Crystal structure of type I ryanodine receptor amino-terminal beta-trefoil domain reveals a disease-associated mutation "hot spot" loop.

Fernando J Amador1, Shuang Liu, Noboru Ishiyama, Michael J Plevin, Aaron Wilson, David H MacLennan, Mitsuhiko Ikura.   

Abstract

Muscle contraction and relaxation is regulated by transient elevations of myoplasmic Ca(2+). Ca(2+) is released from stores in the lumen of the sarco(endo)plasmic reticulum (SER) to initiate formation of the Ca(2+) transient by activation of a class of Ca(2+) release channels referred to as ryanodine receptors (RyRs) and is pumped back into the SER lumen by Ca(2+)-ATPases (SERCAs) to terminate the Ca(2+) transient. Mutations in the type 1 ryanodine receptor gene, RYR1, are associated with 2 skeletal muscle disorders, malignant hyperthermia (MH), and central core disease (CCD). The evaluation of proposed mechanisms by which RyR1 mutations cause MH and CCD is hindered by the lack of high-resolution structural information. Here, we report the crystal structure of the N-terminal 210 residues of RyR1 (RyR(NTD)) at 2.5 A. The RyR(NTD) structure is similar to that of the suppressor domain of type 1 inositol 1,4,5-trisphosphate receptor (IP(3)Rsup), but lacks most of the long helix-turn-helix segment of the "arm" domain in IP(3)Rsup. The N-terminal beta-trefoil fold, found in both RyR and IP(3)R, is likely to play a critical role in regulatory mechanisms in this channel family. A disease-associated mutation "hot spot" loop was identified between strands 8 and 9 in a highly basic region of RyR1. Biophysical studies showed that 3 MH-associated mutations (C36R, R164C, and R178C) do not adversely affect the global stability or fold of RyR(NTD), supporting previously described mechanisms whereby mutations perturb protein-protein interactions.

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Year:  2009        PMID: 19541610      PMCID: PMC2708722          DOI: 10.1073/pnas.0905186106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Postulated role of interdomain interaction within the ryanodine receptor in Ca(2+) channel regulation.

Authors:  T Yamamoto; R El-Hayek; N Ikemoto
Journal:  J Biol Chem       Date:  2000-04-21       Impact factor: 5.157

Review 2.  Mechanisms of Disease: ryanodine receptor defects in heart failure and fatal arrhythmia.

Authors:  Masafumi Yano; Takeshi Yamamoto; Yasuhiro Ikeda; Masunori Matsuzaki
Journal:  Nat Clin Pract Cardiovasc Med       Date:  2006-01

3.  The role of the S4-S5 linker and C-terminal tail in inositol 1,4,5-trisphosphate receptor function.

Authors:  Zachary T Schug; Suresh K Joseph
Journal:  J Biol Chem       Date:  2006-06-30       Impact factor: 5.157

4.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 6.  Calmodulin in action: diversity in target recognition and activation mechanisms.

Authors:  Klaus P Hoeflich; Mitsuhiko Ikura
Journal:  Cell       Date:  2002-03-22       Impact factor: 41.582

Review 7.  The complex regulatory function of the ligand-binding domain of the inositol 1,4,5-trisphosphate receptor.

Authors:  Benoit Devogelaere; Leen Verbert; Jan B Parys; Ludwig Missiaen; Humbert De Smedt
Journal:  Cell Calcium       Date:  2007-05-17       Impact factor: 6.817

8.  Structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with its ligand.

Authors:  Ivan Bosanac; Jean-René Alattia; Tapas K Mal; Jenny Chan; Susanna Talarico; Frances K Tong; Kit I Tong; Fumio Yoshikawa; Teiichi Furuichi; Miwako Iwai; Takayuki Michikawa; Katsuhiko Mikoshiba; Mitsuhiko Ikura
Journal:  Nature       Date:  2002-11-17       Impact factor: 49.962

9.  A novel mutation (Arg169Gln) of the cardiac ryanodine receptor gene causing exercise-induced bidirectional ventricular tachycardia.

Authors:  Chia-Hsiang Hsueh; Yi-Chun Weng; Chao-Yu Chen; Tin-Kwang Lin; Yen-Hung Lin; Ling-Ping Lai; Jiunn-Lee Lin
Journal:  Int J Cardiol       Date:  2006-04-04       Impact factor: 4.164

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  42 in total

Review 1.  IP(3) receptors: toward understanding their activation.

Authors:  Colin W Taylor; Stephen C Tovey
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-10-27       Impact factor: 10.005

2.  The amino-terminal disease hotspot of ryanodine receptors forms a cytoplasmic vestibule.

Authors:  Ching-Chieh Tung; Paolo A Lobo; Lynn Kimlicka; Filip Van Petegem
Journal:  Nature       Date:  2010-11-03       Impact factor: 49.962

3.  CaBP1, a neuronal Ca2+ sensor protein, inhibits inositol trisphosphate receptors by clamping intersubunit interactions.

Authors:  Congmin Li; Masahiro Enomoto; Ana M Rossi; Min-Duk Seo; Taufiq Rahman; Peter B Stathopulos; Colin W Taylor; Mitsuhiko Ikura; James B Ames
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-06       Impact factor: 11.205

Review 4.  Structure and Function of IP3 Receptors.

Authors:  David L Prole; Colin W Taylor
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

5.  Characterization of a novel mutation in the cardiac ryanodine receptor that results in catecholaminergic polymorphic ventricular tachycardia.

Authors:  Dawei Jiang; Peter P Jones; Darryl R Davis; Robert Gow; Martin S Green; David H Birnie; S R Wayne Chen; Michael H Gollob
Journal:  Channels (Austin)       Date:  2010-07-14       Impact factor: 2.581

Review 6.  Ryanodine receptors: structure and function.

Authors:  Filip Van Petegem
Journal:  J Biol Chem       Date:  2012-07-20       Impact factor: 5.157

Review 7.  TRP channels as sensors of oxygen availability.

Authors:  Tomohiro Numata; Nozomi Ogawa; Nobuaki Takahashi; Yasuo Mori
Journal:  Pflugers Arch       Date:  2013-02-17       Impact factor: 3.657

Review 8.  Malignant Hyperthermia in the Post-Genomics Era: New Perspectives on an Old Concept.

Authors:  Sheila Riazi; Natalia Kraeva; Philip M Hopkins
Journal:  Anesthesiology       Date:  2018-01       Impact factor: 7.892

9.  Bioinformatic mapping and production of recombinant N-terminal domains of human cardiac ryanodine receptor 2.

Authors:  Vladena Bauerová-Hlinková; Eva Hostinová; Juraj Gasperík; Konrad Beck; Lubomír Borko; F Anthony Lai; Alexandra Zahradníková; Jozef Sevcík
Journal:  Protein Expr Purif       Date:  2010-01-04       Impact factor: 1.650

Review 10.  Ca(2+) channels on the move.

Authors:  Colin W Taylor; David L Prole; Taufiq Rahman
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

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