Literature DB >> 19539001

IFIH1 gene polymorphisms in type 1 diabetes: genetic association analysis and genotype-phenotype correlation in the Belgian population.

Folefac Aminkeng1, Jan E Van Autreve, Ilse Weets, Erik Quartier, Chris Van Schravendijk, Frans K Gorus, Bart J Van der Auwera.   

Abstract

The evaluation of susceptibility loci in a registry-based setting could be an important addition to the current predictive and screening models in T1D. Therefore, the aim of this study was to evaluate the importance of one of these loci, IFIH1. T1D patients (n=1981), control subjects (n=2092) and 430 families were genotyped for HLA-DQ and IFIH1 nsSNP rs1990760 (Ala946Thr). In the association analysis, the allelic frequencies, A (62.4% vs. 61.3%) and G (37.6% vs. 38.7%) were similar in cases and controls (chi(2) = 0.98, p = 0.32), the genotypic frequencies reveals a weak association with T1D (chi(2) = 6.79, p = 0.03), no significant transmission distortions in families (%T; A = 51.4%, G = 48.0 %, chi(2) = 1.76, p = 0.19) and no interaction with HLA-DQ-linked risk. Furthermore, no genotype-phenotype correlation was observed. In conclusion, IFIH1 has no important role in T1D risk assessment in a registry-based Belgian population.

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Year:  2009        PMID: 19539001     DOI: 10.1016/j.humimm.2009.06.013

Source DB:  PubMed          Journal:  Hum Immunol        ISSN: 0198-8859            Impact factor:   2.850


  7 in total

1.  The interferon-induced helicase IFIH1 Ala946Thr polymorphism is associated with type 1 diabetes in both the high-incidence Finnish and the medium-incidence Hungarian populations.

Authors:  A Jermendy; I Szatmári; A P Laine; K Lukács; K H Horváth; A Körner; L Madácsy; R Veijola; O Simell; M Knip; J Ilonen; R Hermann
Journal:  Diabetologia       Date:  2009-10-20       Impact factor: 10.122

2.  Gestational diabetes mellitus is associated with TCF7L2 gene polymorphisms independent of HLA-DQB1*0602 genotypes and islet cell autoantibodies.

Authors:  A Papadopoulou; K F Lynch; N Shaat; R Håkansson; S A Ivarsson; K Berntorp; C D Agardh; Å Lernmark
Journal:  Diabet Med       Date:  2011-09       Impact factor: 4.359

Review 3.  Selective IgA deficiency in autoimmune diseases.

Authors:  Ning Wang; Nan Shen; Timothy J Vyse; Vidya Anand; Iva Gunnarson; Gunnar Sturfelt; Solbritt Rantapää-Dahlqvist; Kerstin Elvin; Lennart Truedsson; Bengt A Andersson; Charlotte Dahle; Eva Ortqvist; Peter K Gregersen; Timothy W Behrens; Lennart Hammarström
Journal:  Mol Med       Date:  2011-08-04       Impact factor: 6.354

Review 4.  Effects of type 1 diabetes-associated IFIH1 polymorphisms on MDA5 function and expression.

Authors:  Benjamin M Looney; Chang-Qing Xia; Patrick Concannon; David A Ostrov; Michael J Clare-Salzler
Journal:  Curr Diab Rep       Date:  2015-11       Impact factor: 4.810

5.  Enterovirus RNA in peripheral blood may be associated with the variants of rs1990760, a common type 1 diabetes associated polymorphism in IFIH1.

Authors:  Ondrej Cinek; German Tapia; Elisabet Witsø; Lenka Kramna; Katerina Holkova; Trond Rasmussen; Lars C Stene; Kjersti S Rønningen
Journal:  PLoS One       Date:  2012-11-07       Impact factor: 3.240

6.  The role of inflammatory pathway genetic variation on maternal metabolic phenotypes during pregnancy.

Authors:  Margrit Urbanek; M Geoffrey Hayes; Hoon Lee; Rachel M Freathy; Lynn P Lowe; Christine Ackerman; Nadereh Jafari; Alan R Dyer; Nancy J Cox; David B Dunger; Andrew T Hattersley; Boyd E Metzger; William L Lowe
Journal:  PLoS One       Date:  2012-03-30       Impact factor: 3.240

7.  Admixture mapping in lupus identifies multiple functional variants within IFIH1 associated with apoptosis, inflammation, and autoantibody production.

Authors:  Julio E Molineros; Amit K Maiti; Celi Sun; Loren L Looger; Shizhong Han; Xana Kim-Howard; Stuart Glenn; Adam Adler; Jennifer A Kelly; Timothy B Niewold; Gary S Gilkeson; Elizabeth E Brown; Graciela S Alarcón; Jeffrey C Edberg; Michelle Petri; Rosalind Ramsey-Goldman; John D Reveille; Luis M Vilá; Barry I Freedman; Betty P Tsao; Lindsey A Criswell; Chaim O Jacob; Jason H Moore; Timothy J Vyse; Carl L Langefeld; Joel M Guthridge; Patrick M Gaffney; Kathy L Moser; R Hal Scofield; Marta E Alarcón-Riquelme; Scott M Williams; Joan T Merrill; Judith A James; Kenneth M Kaufman; Robert P Kimberly; John B Harley; Swapan K Nath
Journal:  PLoS Genet       Date:  2013-02-18       Impact factor: 5.917

  7 in total

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