Literature DB >> 19537719

Chemical shift anisotropy of imino 15N nuclei in Watson-Crick base pairs from magic angle spinning liquid crystal NMR and nuclear spin relaxation.

Alexander Grishaev1, Lishan Yao, Jinfa Ying, Arthur Pardi, Ad Bax.   

Abstract

Knowledge of (15)N chemical shift anisotropy is prerequisite both for quantitative interpretation of nuclear spin relaxation rates in terms of local dynamics and for the use of residual chemical shift anisotropy (RCSA) as a constraint in structure determination. Accurate measurement of the very small RCSA from the difference in (15)N chemical shift under isotropic and weakly aligning liquid crystalline conditions is very sensitive to minute differences in sample conditions, such as pH or ionic strength. For this reason, chemical shifts were measured for the same solution, under static liquid crystalline alignment, and under magic angle spinning conditions where alignment relative to the magnetic field is removed. Measurements were made for 14 well-resolved G-N(1) and 6 U-N(3) (15)N nuclei in a sample of tRNA(Val). Fitting these RCSA data together with (15)N-(1)H dipole-CSA cross-correlated relaxation measurements to the recently refined structural model of tRNA(Val) yields the magnitude, asymmetry, and orientation of the (15)N CSA tensors.

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Year:  2009        PMID: 19537719      PMCID: PMC2729426          DOI: 10.1021/ja903244s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

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3.  Molecular-orientation analysis based on alignment-induced TROSY chemical shift changes.

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4.  Insight into the CSA tensors of nucleobase carbons in RNA polynucleotides from solution measurements of residual CSA: towards new long-range orientational constraints.

Authors:  Alexandar L Hansen; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2006-01-23       Impact factor: 2.229

5.  Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints.

Authors:  Alexander Grishaev; Vitali Tugarinov; Lewis E Kay; Jill Trewhella; Ad Bax
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6.  NMR determination of amide N-H equilibrium bond length from concerted dipolar coupling measurements.

Authors:  Lishan Yao; Beat Vögeli; Jinfa Ying; Ad Bax
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

Review 7.  Theory and practice of nuclear spin relaxation in proteins.

Authors:  K T Dayie; G Wagner; J F Lefèvre
Journal:  Annu Rev Phys Chem       Date:  1996       Impact factor: 12.703

8.  Hydrogen bonding effects on the (15)N and (1)H shielding tensors in nucleic acid base pairs.

Authors:  J Czernek; R Fiala; V Sklenár
Journal:  J Magn Reson       Date:  2000-07       Impact factor: 2.229

9.  Pseudo-CSA restraints for NMR refinement of nucleic acid structure.

Authors:  Alexander Grishaev; Jinfa Ying; Ad Bax
Journal:  J Am Chem Soc       Date:  2006-08-09       Impact factor: 15.419

10.  13C and (15)N chemical shift tensors in adenosine, guanosine dihydrate, 2'-deoxythymidine, and cytidine.

Authors:  Dirk Stueber; David M Grant
Journal:  J Am Chem Soc       Date:  2002-09-04       Impact factor: 15.419

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  8 in total

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2.  A device for the measurement of residual chemical shift anisotropy and residual dipolar coupling in soluble and membrane-associated proteins.

Authors:  Yizhou Liu; James H Prestegard
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Review 3.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
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4.  Maximizing accuracy of RNA structure in refinement against residual dipolar couplings.

Authors:  Christina Bergonzo; Alexander Grishaev
Journal:  J Biomol NMR       Date:  2019-05-02       Impact factor: 2.835

5.  Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities.

Authors:  Jinfa Ying; Jinbu Wang; Alex Grishaev; Ping Yu; Yun-Xing Wang; Ad Bax
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

6.  Evaluation of 15N-detected H-N correlation experiments on increasingly large RNAs.

Authors:  Robbin Schnieders; Christian Richter; Sven Warhaut; Vanessa de Jesus; Sara Keyhani; Elke Duchardt-Ferner; Heiko Keller; Jens Wöhnert; Lars T Kuhn; Alexander L Breeze; Wolfgang Bermel; Harald Schwalbe; Boris Fürtig
Journal:  J Biomol NMR       Date:  2017-09-06       Impact factor: 2.835

7.  Site-specific backbone amide (15)N chemical shift anisotropy tensors in a small protein from liquid crystal and cross-correlated relaxation measurements.

Authors:  Lishan Yao; Alexander Grishaev; Gabriel Cornilescu; Ad Bax
Journal:  J Am Chem Soc       Date:  2010-03-31       Impact factor: 15.419

8.  RNA modifications stabilize the tertiary structure of tRNAfMet by locally increasing conformational dynamics.

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Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

  8 in total

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