Literature DB >> 19537209

DNA phylogeny reveals polyphyly of Phoma section Peyronellaea and multiple taxonomic novelties.

Maikel M Aveskamp1, Gerard J M Verkley, Johannes de Gruyter, Mónica A Murace, Analia Perelló, Joyce H C Woudenberg, Johannes Z Groenewald, Pedro W Crous.   

Abstract

Species of the anamorph genus Phoma are commonly isolated from a wide range of ecological niches. They are notoriously difficult to identify due to the paucity of morphological features and the plasticity of these when cultivated on agar media. Species linked to Phoma section Peyronellaea are typified by the production of dictyochlamydospores and thus have additional characters to use in taxon delineation. However, the taxonomy of this section is still not fully understood. Furthermore the production of such chlamydospores also is known in some other sections of Phoma. DNA sequences were generated from three loci, namely ITS, actin, and 3-tubulin, to clarify the phylogeny of Phoma taxa that produce dictyochlamydospores. Results were unable to support section Peyronellaea as a taxonomic entity. Dictyochlamydospore formation appears to be a feature that developed, or was lost, many times during the evolution of Phoma. Furthermore, based on the multigene analyses, five new Phoma species could be delineated while a further five required taxonomic revision to be consistent with the genetic variation observed.

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Year:  2009        PMID: 19537209     DOI: 10.3852/08-199

Source DB:  PubMed          Journal:  Mycologia        ISSN: 0027-5514            Impact factor:   2.696


  39 in total

1.  Highlights of the Didymellaceae: A polyphasic approach to characterise Phoma and related pleosporalean genera.

Authors:  M M Aveskamp; J de Gruyter; J H C Woudenberg; G J M Verkley; P W Crous
Journal:  Stud Mycol       Date:  2010       Impact factor: 16.097

2.  Fungal Planet description sheets: 214-280.

Authors:  P W Crous; R G Shivas; W Quaedvlieg; M van der Bank; Y Zhang; B A Summerell; J Guarro; M J Wingfield; A R Wood; A C Alfenas; U Braun; J F Cano-Lira; D García; Y Marin-Felix; P Alvarado; J P Andrade; J Armengol; A Assefa; A den Breeÿen; I Camele; R Cheewangkoon; J T De Souza; T A Duong; F Esteve-Raventós; J Fournier; S Frisullo; J García-Jiménez; A Gardiennet; J Gené; M Hernández-Restrepo; Y Hirooka; D R Hospenthal; A King; C Lechat; L Lombard; S M Mang; P A S Marbach; S Marincowitz; Y Marin-Felix; N J Montaño-Mata; G Moreno; C A Perez; A M Pérez Sierra; J L Robertson; J Roux; E Rubio; R K Schumacher; A M Stchigel; D A Sutton; Y P Tan; E H Thompson; E van der Linde; A K Walker; D M Walker; B L Wickes; P T W Wong; J Z Groenewald
Journal:  Persoonia       Date:  2014-06-10       Impact factor: 11.051

3.  Didymellaceae revisited.

Authors:  Q Chen; L W Hou; W J Duan; P W Crous; L Cai
Journal:  Stud Mycol       Date:  2017-06-09       Impact factor: 16.097

Review 4.  Advances in taxonomy of genus phoma: polyphyletic nature and role of phenotypic traits and molecular systematics.

Authors:  Mahendra Kumar Rai; Vaibhav V Tiwari; László Irinyi; György János Kövics
Journal:  Indian J Microbiol       Date:  2013-12-04       Impact factor: 2.461

5.  Genera of phytopathogenic fungi: GOPHY 1.

Authors:  Y Marin-Felix; J Z Groenewald; L Cai; Q Chen; S Marincowitz; I Barnes; K Bensch; U Braun; E Camporesi; U Damm; Z W de Beer; A Dissanayake; J Edwards; A Giraldo; M Hernández-Restrepo; K D Hyde; R S Jayawardena; L Lombard; J Luangsa-Ard; A R McTaggart; A Y Rossman; M Sandoval-Denis; M Shen; R G Shivas; Y P Tan; E J van der Linde; M J Wingfield; A R Wood; J Q Zhang; Y Zhang; P W Crous
Journal:  Stud Mycol       Date:  2017-05-05       Impact factor: 16.097

6.  Genera of phytopathogenic fungi: GOPHY 2.

Authors:  Y Marin-Felix; M Hernández-Restrepo; M J Wingfield; A Akulov; A J Carnegie; R Cheewangkoon; D Gramaje; J Z Groenewald; V Guarnaccia; F Halleen; L Lombard; J Luangsa-Ard; S Marincowitz; A Moslemi; L Mostert; W Quaedvlieg; R K Schumacher; C F J Spies; R Thangavel; P W J Taylor; A M Wilson; B D Wingfield; A R Wood; P W Crous
Journal:  Stud Mycol       Date:  2018-05-01       Impact factor: 16.097

7.  Resolving the Phoma enigma.

Authors:  Q Chen; J R Jiang; G Z Zhang; L Cai; P W Crous
Journal:  Stud Mycol       Date:  2015-11-26       Impact factor: 16.097

8.  Phylogenetic revision of Camarosporium (Pleosporineae, Dothideomycetes) and allied genera.

Authors:  D N Wanasinghe; K D Hyde; R Jeewon; P W Crous; N N Wijayawardene; E B G Jones; D J Bhat; A J L Phillips; J Z Groenewald; M C Dayarathne; C Phukhamsakda; K M Thambugala; T S Bulgakov; E Camporesi; Y S Gafforov; P E Mortimer; S C Karunarathna
Journal:  Stud Mycol       Date:  2017-08-23       Impact factor: 16.097

9.  Coelomycetous Dothideomycetes with emphasis on the families Cucurbitariaceae and Didymellaceae.

Authors:  N Valenzuela-Lopez; J F Cano-Lira; J Guarro; D A Sutton; N Wiederhold; P W Crous; A M Stchigel
Journal:  Stud Mycol       Date:  2017-11-21       Impact factor: 16.097

10.  A class-wide phylogenetic assessment of Dothideomycetes.

Authors:  C L Schoch; P W Crous; J Z Groenewald; E W A Boehm; T I Burgess; J de Gruyter; G S de Hoog; L J Dixon; M Grube; C Gueidan; Y Harada; S Hatakeyama; K Hirayama; T Hosoya; S M Huhndorf; K D Hyde; E B G Jones; J Kohlmeyer; A Kruys; Y M Li; R Lücking; H T Lumbsch; L Marvanová; J S Mbatchou; A H McVay; A N Miller; G K Mugambi; L Muggia; M P Nelsen; P Nelson; C A Owensby; A J L Phillips; S Phongpaichit; S B Pointing; V Pujade-Renaud; H A Raja; E Rivas Plata; B Robbertse; C Ruibal; J Sakayaroj; T Sano; L Selbmann; C A Shearer; T Shirouzu; B Slippers; S Suetrong; K Tanaka; B Volkmann-Kohlmeyer; M J Wingfield; A R Wood; J H C Woudenberg; H Yonezawa; Y Zhang; J W Spatafora
Journal:  Stud Mycol       Date:  2009       Impact factor: 16.097

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