Literature DB >> 19536065

Seawater sampling and collection.

Elena Zaikova1, Alyse Hawley, David A Walsh, Steven J Hallam.   

Abstract

This video documents methods for collecting coastal marine water samples and processing them for various downstream applications including biomass concentration. nucleic acid purification, cell abundance, nutrient and trace gas analyses. For today's demonstration samples were collected from the deck of the HMS John Strickland operating in Saanich Inlet. An A-frame derrick, with a multi-purpose winch and cable system, is used in combination with Niskin or Go-Flo water sampling bottles. A Conductivity, Temperature, and Depth (CTD) sensor is also be used to sample the underlying water mass. To minimize outgassing, trace gas samples are collected first. Then, nutrients, chemistry, and cell counts are determined. Finally, waters are collected for biomass filtration. The set-up and collection time for a single cast is approximately 1.5 hours at a maximum depth of 215 meters. Therefore, a total of 6 hours is generally needed to complete the four-part collection series described here.

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Year:  2009        PMID: 19536065      PMCID: PMC3253651          DOI: 10.3791/1159

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  6 in total

1.  Effect of oxygen minimum zone formation on communities of marine protists.

Authors:  William Orsi; Young C Song; Steven Hallam; Virginia Edgcomb
Journal:  ISME J       Date:  2012-03-08       Impact factor: 10.302

2.  Large insert environmental genomic library production.

Authors:  Marcus Taupp; Sangwon Lee; Alyse Hawley; Jinshu Yang; Steven J Hallam
Journal:  J Vis Exp       Date:  2009-09-23       Impact factor: 1.355

3.  Global Distribution Patterns and Pangenomic Diversity of the Candidate Phylum "Latescibacteria" (WS3).

Authors:  Ibrahim F Farag; Noha H Youssef; Mostafa S Elshahed
Journal:  Appl Environ Microbiol       Date:  2017-05-01       Impact factor: 4.792

4.  Ammonium and nitrite oxidation at nanomolar oxygen concentrations in oxygen minimum zone waters.

Authors:  Laura A Bristow; Tage Dalsgaard; Laura Tiano; Daniel B Mills; Anthony D Bertagnolli; Jody J Wright; Steven J Hallam; Osvaldo Ulloa; Donald E Canfield; Niels Peter Revsbech; Bo Thamdrup
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

5.  Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.

Authors:  Elke Allers; Jody J Wright; Kishori M Konwar; Charles G Howes; Erica Beneze; Steven J Hallam; Matthew B Sullivan
Journal:  ISME J       Date:  2012-11-15       Impact factor: 10.302

6.  Genomic properties of Marine Group A bacteria indicate a role in the marine sulfur cycle.

Authors:  Jody J Wright; Keith Mewis; Niels W Hanson; Kishori M Konwar; Kendra R Maas; Steven J Hallam
Journal:  ISME J       Date:  2013-09-12       Impact factor: 10.302

  6 in total

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