Literature DB >> 19535851

Towards the best model for H atoms in experimental charge-density refinement.

Anna A Hoser1, Paulina M Dominiak, Krzysztof Woźniak.   

Abstract

The consequences of different treatments of H atoms in experimental charge-density studies are discussed. Geometric and topological parameters obtained after applying four different H-atom models in multipolar refinement on high-resolution X-ray data only were compared with the results obtained for a reference joint high-resolution X-ray/neutron refinement. The geometry and the topological critical point and integrated parameters closest to the reference values were obtained after a mixed refinement (high-order refinement of heavy atoms, low-angle refinement of H atoms and elongation of the X-H distance to the average neutron bond lengths) supplemented by an estimation of the anisotropic thermal motions of H atoms using the SHADE program. Such a procedure works very well even for strong hydrogen bonds. The worst fit to the reference results for both critical point and integrated parameters was obtained when only the standardization to the average neutron X-H distances was applied. The non-H-atom parameters are also systematically influenced by the H-atom modeling. In order to compare topological and integrated properties calculated for H and non-H atoms in multipolar refinement when there are no neutron data, the same treatment of H atoms (ideally the mixed refinement + estimated anisotropic atomic displacement parameters for H atoms) should be applied.

Entities:  

Year:  2009        PMID: 19535851     DOI: 10.1107/S0108767309019862

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  10 in total

1.  Predicting anisotropic thermal displacements for hydrogens from solid-state NMR: a study on hydrogen bonding in polymorphs of palmitic acid.

Authors:  Luther Wang; Fernando J Uribe-Romo; Leonard J Mueller; James K Harper
Journal:  Phys Chem Chem Phys       Date:  2018-03-28       Impact factor: 3.676

2.  Experimental Electron Density and Neutron Diffraction Studies on the Polymorphs of Sulfathiazole.

Authors:  Ioana Sovago; Matthias J Gutmann; J Grant Hill; Hans Martin Senn; Lynne H Thomas; Chick C Wilson; Louis J Farrugia
Journal:  Cryst Growth Des       Date:  2014-01-17       Impact factor: 4.076

3.  Hirshfeld atom refinement.

Authors:  Silvia C Capelli; Hans-Beat Bürgi; Birger Dittrich; Simon Grabowsky; Dylan Jayatilaka
Journal:  IUCrJ       Date:  2014-08-29       Impact factor: 4.769

4.  Hydrogen atoms can be located accurately and precisely by x-ray crystallography.

Authors:  Magdalena Woińska; Simon Grabowsky; Paulina M Dominiak; Krzysztof Woźniak; Dylan Jayatilaka
Journal:  Sci Adv       Date:  2016-05-27       Impact factor: 14.136

5.  Yes, one can obtain better quality structures from routine X-ray data collection.

Authors:  W Fabiola Sanjuan-Szklarz; Anna A Hoser; Matthias Gutmann; Anders Østergaard Madsen; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2016-01-01       Impact factor: 4.769

6.  Probing the accuracy and precision of Hirshfeld atom refinement with HARt interfaced with Olex2.

Authors:  Malte Fugel; Dylan Jayatilaka; Emanuel Hupf; Jacob Overgaard; Venkatesha R Hathwar; Piero Macchi; Michael J Turner; Judith A K Howard; Oleg V Dolomanov; Horst Puschmann; Bo B Iversen; Hans-Beat Bürgi; Simon Grabowsky
Journal:  IUCrJ       Date:  2018-01-01       Impact factor: 4.769

7.  The advanced treatment of hydrogen bonding in quantum crystallography.

Authors:  Lorraine A Malaspina; Alessandro Genoni; Dylan Jayatilaka; Michael J Turner; Kunihisa Sugimoto; Eiji Nishibori; Simon Grabowsky
Journal:  J Appl Crystallogr       Date:  2021-04-16       Impact factor: 3.304

8.  Estimating temperature-dependent anisotropic hydrogen displacements with the invariom database and a new segmented rigid-body analysis program.

Authors:  Jens Lübben; Luc J Bourhis; Birger Dittrich
Journal:  J Appl Crystallogr       Date:  2015-11-10       Impact factor: 3.304

Review 9.  Contributions of charge-density research to medicinal chemistry.

Authors:  Birger Dittrich; Chérif F Matta
Journal:  IUCrJ       Date:  2014-09-23       Impact factor: 4.769

10.  On the accuracy and precision of X-ray and neutron diffraction results as a function of resolution and the electron density model.

Authors:  W Fabiola Sanjuan-Szklarz; Magdalena Woińska; Sławomir Domagała; Paulina M Dominiak; Simon Grabowsky; Dylan Jayatilaka; Matthias Gutmann; Krzysztof Woźniak
Journal:  IUCrJ       Date:  2020-08-25       Impact factor: 4.769

  10 in total

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