Literature DB >> 19535479

Temporal analysis of stochastic turning behavior of swimming C. elegans.

Nikhil Srivastava1, Damon A Clark, Aravinthan D T Samuel.   

Abstract

Caenorhabditis elegans exhibits spontaneous motility in isotropic environments, characterized by periods of forward movements punctuated at random by turning movements. Here, we study the statistics of turning movements-deep Omega-shaped bends-exhibited by swimming worms. We show that the durations of intervals between successive Omega-turns are uncorrelated with one another and are effectively selected from a probability distribution resembling the sum of two exponentials. The worm initially exhibits frequent Omega-turns on being placed in liquid, and the mean rate of Omega-turns lessens over time. The statistics of Omega-turns is consistent with a phenomenological model involving two behavioral states governed by Poisson kinetics: a "slow" state generates Omega-turns with a low probability per unit time; a "fast" state generates Omega-turns with a high probability per unit time; and the worm randomly transitions between these slow and fast states. Our findings suggest that the statistics of spontaneous Omega-turns exhibited by swimming worms may be described using a small number of parameters, consistent with a two-state phenomenological model for the mechanisms that spontaneously generate Omega-turns.

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Year:  2009        PMID: 19535479      PMCID: PMC2724359          DOI: 10.1152/jn.90952.2008

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  28 in total

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Authors:  S L McIntire; R J Reimer; K Schuske; R H Edwards; E M Jorgensen
Journal:  Nature       Date:  1997-10-23       Impact factor: 49.962

2.  A circuit for navigation in Caenorhabditis elegans.

Authors:  Jesse M Gray; Joseph J Hill; Cornelia I Bargmann
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-02       Impact factor: 11.205

3.  Regulation of interneuron function in the C. elegans thermoregulatory pathway by the ttx-3 LIM homeobox gene.

Authors:  O Hobert; I Mori; Y Yamashita; H Honda; Y Ohshima; Y Liu; G Ruvkun
Journal:  Neuron       Date:  1997-08       Impact factor: 17.173

4.  The fundamental role of pirouettes in Caenorhabditis elegans chemotaxis.

Authors:  J T Pierce-Shimomura; T M Morse; S R Lockery
Journal:  J Neurosci       Date:  1999-11-01       Impact factor: 6.167

5.  Analysis of osm-6, a gene that affects sensory cilium structure and sensory neuron function in Caenorhabditis elegans.

Authors:  J Collet; C A Spike; E A Lundquist; J E Shaw; R K Herman
Journal:  Genetics       Date:  1998-01       Impact factor: 4.562

6.  Short-term adaptation and temporal processing in the cryophilic response of Caenorhabditis elegans.

Authors:  Damon A Clark; Christopher V Gabel; Timothy M Lee; Aravinthan D T Samuel
Journal:  J Neurophysiol       Date:  2006-12-06       Impact factor: 2.714

7.  The Caenorhabditis elegans gene unc-25 encodes glutamic acid decarboxylase and is required for synaptic transmission but not synaptic development.

Authors:  Y Jin; E Jorgensen; E Hartwieg; H R Horvitz
Journal:  J Neurosci       Date:  1999-01-15       Impact factor: 6.167

8.  EAT-4, a homolog of a mammalian sodium-dependent inorganic phosphate cotransporter, is necessary for glutamatergic neurotransmission in caenorhabditis elegans.

Authors:  R Y Lee; E R Sawin; M Chalfie; H R Horvitz; L Avery
Journal:  J Neurosci       Date:  1999-01-01       Impact factor: 6.167

9.  Control of alternative behavioral states by serotonin in Caenorhabditis elegans.

Authors:  L E Waggoner; G T Zhou; R W Schafer; W R Schafer
Journal:  Neuron       Date:  1998-07       Impact factor: 17.173

10.  The role of the AFD neuron in C. elegans thermotaxis analyzed using femtosecond laser ablation.

Authors:  Samuel H Chung; Damon A Clark; Christopher V Gabel; Eric Mazur; Aravinthan D T Samuel
Journal:  BMC Neurosci       Date:  2006-04-06       Impact factor: 3.288

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  19 in total

1.  Characterization of the crawling activity of Caenorhabditis elegans using a Hidden Markov model.

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Journal:  Theory Biosci       Date:  2015-08-29       Impact factor: 1.919

2.  High-throughput, motility-based sorter for microswimmers such as C. elegans.

Authors:  Jinzhou Yuan; Jessie Zhou; David M Raizen; Haim H Bau
Journal:  Lab Chip       Date:  2015-05-26       Impact factor: 6.799

3.  The microarchitecture of C. elegans behavior during lethargus: homeostatic bout dynamics, a typical body posture, and regulation by a central neuron.

Authors:  Shachar Iwanir; Nora Tramm; Stanislav Nagy; Charles Wright; Daniel Ish; David Biron
Journal:  Sleep       Date:  2013-03-01       Impact factor: 5.849

4.  A quantitative model of conserved macroscopic dynamics predicts future motor commands.

Authors:  Connor Brennan; Alexander Proekt
Journal:  Elife       Date:  2019-07-11       Impact factor: 8.140

5.  Functional organization of a neural network for aversive olfactory learning in Caenorhabditis elegans.

Authors:  Heon-ick Ha; Michael Hendricks; Yu Shen; Christopher V Gabel; Christopher Fang-Yen; Yuqi Qin; Daniel Colón-Ramos; Kang Shen; Aravinthan D T Samuel; Yun Zhang
Journal:  Neuron       Date:  2010-12-22       Impact factor: 17.173

6.  Mechanistic analysis of the search behaviour of Caenorhabditis elegans.

Authors:  Liliana C M Salvador; Frederic Bartumeus; Simon A Levin; William S Ryu
Journal:  J R Soc Interface       Date:  2014-01-15       Impact factor: 4.118

7.  From modes to movement in the behavior of Caenorhabditis elegans.

Authors:  Greg J Stephens; Bethany Johnson-Kerner; William Bialek; William S Ryu
Journal:  PLoS One       Date:  2010-11-16       Impact factor: 3.240

Review 8.  Caenorhabditis elegans: a model system for systems neuroscience.

Authors:  Piali Sengupta; Aravinthan D T Samuel
Journal:  Curr Opin Neurobiol       Date:  2009-11-04       Impact factor: 6.627

9.  Discriminating external and internal causes for heading changes in freely flying Drosophila.

Authors:  Andrea Censi; Andrew D Straw; Rosalyn W Sayaman; Richard M Murray; Michael H Dickinson
Journal:  PLoS Comput Biol       Date:  2013-02-28       Impact factor: 4.475

10.  The geometry of locomotive behavioral states in C. elegans.

Authors:  Thomas Gallagher; Theresa Bjorness; Robert Greene; Young-Jai You; Leon Avery
Journal:  PLoS One       Date:  2013-03-28       Impact factor: 3.240

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