Literature DB >> 19530687

Time-of-flight secondary ion mass spectrometry imaging of subcellular lipid heterogeneity: Poisson counting and spatial resolution.

Paul D Piehowski1, Angel M Davey, Michael E Kurczy, Erin D Sheets, Nicholas Winograd, Andrew G Ewing, Michael L Heien.   

Abstract

Mass spectrometric imaging is a powerful tool to interrogate biological complexity. One such technique, time-of-flight secondary ion mass spectrometry (TOF-SIMS) imaging, has been successfully utilized for subcellular imaging of cell membrane components. In order for this technique to provide insight into biological processes, it is critical to characterize the figures of merit. Because a SIMS instrument counts individual events, the precision of the measurement is controlled by counting statistics. As the analysis area decreases, the number of molecules available for analysis diminishes. This becomes critical when imaging subcellular features; it limits the information obtainable, resulting in images with only a few counts of interest per pixel. Many features observed in low intensity images are artifacts of counting statistics, making validation of these features crucial to arriving at accurate conclusions. With TOF-SIMS imaging, the experimentally attainable spatial resolution is a function of the molecule of interest, sample matrix, concentration, primary ion, instrument transmission, and spot size of the primary ion beam. A model, based on Poisson statistics, has been developed to validate SIMS imaging data when signal is limited. This model can be used to estimate the effective spatial resolution and limits of detection prior to analysis, making it a powerful tool for tailoring future investigations. In addition, the model allows comparison of pixel-to-pixel intensity and can be used to validate the significance of observed image features. The implications and capabilities of the model are demonstrated by imaging the cell membrane of resting RBL-2H3 mast cells.

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Year:  2009        PMID: 19530687      PMCID: PMC2758657          DOI: 10.1021/ac901065s

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  30 in total

1.  A new dynamic in mass spectral imaging of single biological cells.

Authors:  John S Fletcher; Sadia Rabbani; Alex Henderson; Paul Blenkinsopp; Steve P Thompson; Nicholas P Lockyer; John C Vickerman
Journal:  Anal Chem       Date:  2008-12-01       Impact factor: 6.986

2.  Vitamin E imaging and localization in the neuronal membrane.

Authors:  Eric B Monroe; John C Jurchen; Jinju Lee; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

3.  Fluorescence anisotropy measurements of lipid order in plasma membranes and lipid rafts from RBL-2H3 mast cells.

Authors:  A Gidwani; D Holowka; B Baird
Journal:  Biochemistry       Date:  2001-10-16       Impact factor: 3.162

4.  Direct molecular imaging of Lymnaea stagnalis nervous tissue at subcellular spatial resolution by mass spectrometry.

Authors:  A F Maarten Altelaar; Jan van Minnen; Connie R Jiménez; Ron M A Heeren; Sander R Piersma
Journal:  Anal Chem       Date:  2005-02-01       Impact factor: 6.986

5.  Supported membrane composition analysis by secondary ion mass spectrometry with high lateral resolution.

Authors:  Carine Galli Marxer; Mary L Kraft; Peter K Weber; Ian D Hutcheon; Steven G Boxer
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

6.  Mass spectrometric imaging of highly curved membranes during Tetrahymena mating.

Authors:  Sara G Ostrowski; Craig T Van Bell; Nicholas Winograd; Andrew G Ewing
Journal:  Science       Date:  2004-07-02       Impact factor: 47.728

Review 7.  The state of lipid rafts: from model membranes to cells.

Authors:  Michael Edidin
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-01-16

8.  Important role of raft aggregation in the signaling events of cold-induced platelet activation.

Authors:  Karine Gousset; Nelly M Tsvetkova; John H Crowe; Fern Tablin
Journal:  Biochim Biophys Acta       Date:  2004-01-28

9.  Measure of carbon and nitrogen stable isotope ratios in cultured cells.

Authors:  R Peteranderl; C Lechene
Journal:  J Am Soc Mass Spectrom       Date:  2004-04       Impact factor: 3.109

10.  Identification of cellular sections with imaging mass spectrometry following freeze fracture.

Authors:  Thomas P Roddy; Donald M Cannon; Sara G Ostrowski; Nicholas Winograd; Andrew G Ewing
Journal:  Anal Chem       Date:  2002-08-15       Impact factor: 6.986

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  12 in total

1.  Fluorinated colloidal gold immunolabels for imaging select proteins in parallel with lipids using high-resolution secondary ion mass spectrometry.

Authors:  Robert L Wilson; Jessica F Frisz; William P Hanafin; Kevin J Carpenter; Ian D Hutcheon; Peter K Weber; Mary L Kraft
Journal:  Bioconjug Chem       Date:  2012-02-15       Impact factor: 4.774

2.  Image and Spectral Processing for ToF-SIMS Analysis of Biological Materials.

Authors:  Daniel J Graham; David G Castner
Journal:  Mass Spectrom (Tokyo)       Date:  2013-04-15

Review 3.  Correlated imaging--a grand challenge in chemical analysis.

Authors:  Rachel Masyuko; Eric J Lanni; Jonathan V Sweedler; Paul W Bohn
Journal:  Analyst       Date:  2013-02-21       Impact factor: 4.616

4.  Compositional mapping of the surface and interior of mammalian cells at submicrometer resolution.

Authors:  Christopher Szakal; Kedar Narayan; Jing Fu; Jonathan Lefman; Sriram Subramaniam
Journal:  Anal Chem       Date:  2011-01-26       Impact factor: 6.986

Review 5.  From pixel to voxel: a deeper view of biological tissue by 3D mass spectral imaging.

Authors:  Hui Ye; Tyler Greer; Lingjun Li
Journal:  Bioanalysis       Date:  2011-02       Impact factor: 2.681

6.  Identifying individual cell types in heterogeneous cultures using secondary ion mass spectrometry imaging with C60 etching and multivariate analysis.

Authors:  Christopher A Barnes; Jeremy Brison; Michael Robinson; Daniel J Graham; David G Castner; Buddy D Ratner
Journal:  Anal Chem       Date:  2012-01-03       Impact factor: 6.986

7.  Single-Cell Metabolic Profiling of Macrophages Using 3D OrbiSIMS: Correlations with Phenotype.

Authors:  Waraporn Suvannapruk; Max K Edney; Dong-Hyun Kim; David J Scurr; Amir M Ghaemmaghami; Morgan R Alexander
Journal:  Anal Chem       Date:  2022-06-17       Impact factor: 8.008

8.  Improving secondary ion mass spectrometry image quality with image fusion.

Authors:  Jay G Tarolli; Lauren M Jackson; Nicholas Winograd
Journal:  J Am Soc Mass Spectrom       Date:  2014-06-10       Impact factor: 3.109

9.  Quantifying biological samples using Linear Poisson Independent Component Analysis for MALDI-ToF mass spectra.

Authors:  S Deepaisarn; P D Tar; N A Thacker; A Seepujak; A W McMahon
Journal:  Bioinformatics       Date:  2018-03-15       Impact factor: 6.937

10.  A reformulation of pLSA for uncertainty estimation and hypothesis testing in bio-imaging.

Authors:  P D Tar; N A Thacker; S Deepaisarn; J P B O'Connor; A W McMahon
Journal:  Bioinformatics       Date:  2020-07-01       Impact factor: 6.937

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