Literature DB >> 19530109

CANADA: designing nucleic acid sequences for nanobiotechnology applications.

Udo Feldkamp1.   

Abstract

The design of nucleic acid sequences for a highly specific and efficient hybridization is a crucial step in DNA computing and DNA-based nanotechnology applications. The CANADA package contains software tools for designing DNA sequences that meet these and other requirements, as well as for analyzing and handling sequences. CANADA is freely available, including a detailed manual and example input files, at http://ls11-www.cs.uni-dortmund.de/molcomp/downloads. Copyright 2009 Wiley Periodicals, Inc.

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Year:  2010        PMID： 19530109     DOI： 10.1002/jcc.21353

Source DB:  PubMed          Journal:  J Comput Chem        ISSN： 0192-8651            Impact factor:   3.376


  8 in total

1.  Creating complex molecular topologies by configuring DNA four-way junctions.

Authors:  Di Liu; Gang Chen; Usman Akhter; Timothy M Cronin; Yossi Weizmann
Journal:  Nat Chem       Date:  2016-07-04       Impact factor: 24.427

2.  Branched kissing loops for the construction of diverse RNA homooligomeric nanostructures.

Authors:  Di Liu; Cody W Geary; Gang Chen; Yaming Shao; Mo Li; Chengde Mao; Ebbe S Andersen; Joseph A Piccirilli; Paul W K Rothemund; Yossi Weizmann
Journal:  Nat Chem       Date:  2020-01-20       Impact factor: 24.427

3.  DNA-directed assembly of antibody-fluorophore conjugates for quantitative multiparametric flow cytometry.

Authors:  Amy C Flor; Jimmy H Williams; Kelly M Blaine; Ryan C Duggan; Anne I Sperling; David A Schwartz; Stephen J Kron
Journal:  Chembiochem       Date:  2013-12-27       Impact factor: 3.164

4.  EGNAS: an exhaustive DNA sequence design algorithm.

Authors:  Alfred Kick; Martin Bönsch; Michael Mertig
Journal:  BMC Bioinformatics       Date:  2012-06-20       Impact factor: 3.169

5.  DNA-barcoded labeling probes for highly multiplexed Exchange-PAINT imaging.

Authors:  Sarit S Agasti; Yu Wang; Florian Schueder; Aishwarya Sukumar; Ralf Jungmann; Peng Yin
Journal:  Chem Sci       Date:  2017-01-30       Impact factor: 9.825

6.  Synthesizing topological structures containing RNA.

Authors:  Di Liu; Yaming Shao; Gang Chen; Yuk-Ching Tse-Dinh; Joseph A Piccirilli; Yossi Weizmann
Journal:  Nat Commun       Date:  2017-03-31       Impact factor: 14.919

7.  Design principles for rapid folding of knotted DNA nanostructures.

Authors:  Vid Kočar; John S Schreck; Slavko Čeru; Helena Gradišar; Nino Bašić; Tomaž Pisanski; Jonathan P K Doye; Roman Jerala
Journal:  Nat Commun       Date:  2016-02-18       Impact factor: 14.919

Review 8.  DNA Transformations for Diagnosis and Therapy.

Authors:  So Yeon Ahn; Jin Liu; Srivithya Vellampatti; Yuzhou Wu; Soong Ho Um
Journal:  Adv Funct Mater       Date:  2020-12-27       Impact factor: 19.924
  8 in total

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