Literature DB >> 19527963

The pseudotemporal bootstrap for predicting glaucoma from cross-sectional visual field data.

Allan Tucker1, David Garway-Heath.   

Abstract

Progressive loss of the field of vision is characteristic of a number of eye diseases such as glaucoma, a leading cause of irreversible blindness in the world. Recently, there has been an explosion in the amount of data being stored on patients who suffer from visual deterioration, including visual field (VF) test, retinal image, and frequent intraocular pressure measurements. Like the progression of many biological and medical processes, VF progression is inherently temporal in nature. However, many datasets associated with the study of such processes are often cross sectional and the time dimension is not measured due to the expensive nature of such studies. In this paper, we address this issue by developing a method to build artificial time series, which we call pseudo time series from cross-sectional data. This involves building trajectories through all of the data that can then, in turn, be used to build temporal models for forecasting (which would otherwise be impossible without longitudinal data). Glaucoma, like many diseases, is a family of conditions and it is, therefore, likely that there will be a number of key trajectories that are important in understanding the disease. In order to deal with such situations, we extend the idea of pseudo time series by using resampling techniques to build multiple sequences prior to model building. This approach naturally handles outliers and multiple possible disease trajectories. We demonstrate some key properties of our approach on synthetic data and present very promising results on VF data for predicting glaucoma.

Entities:  

Mesh:

Year:  2009        PMID: 19527963     DOI: 10.1109/TITB.2009.2023319

Source DB:  PubMed          Journal:  IEEE Trans Inf Technol Biomed        ISSN: 1089-7771


  6 in total

1.  Anonymization of longitudinal electronic medical records.

Authors:  Acar Tamersoy; Grigorios Loukides; Mehmet Ercan Nergiz; Yucel Saygin; Bradley Malin
Journal:  IEEE Trans Inf Technol Biomed       Date:  2012-01-27

2.  Detecting glaucoma progression from localized rates of retinal changes in parametric and nonparametric statistical framework with type I error control.

Authors:  Madhusudhanan Balasubramanian; Ery Arias-Castro; Felipe A Medeiros; David J Kriegman; Christopher Bowd; Robert N Weinreb; Michael Holst; Pamela A Sample; Linda M Zangwill
Journal:  Invest Ophthalmol Vis Sci       Date:  2014-03-19       Impact factor: 4.799

3.  Heavy-tailed prediction error: a difficulty in predicting biomedical signals of 1/f noise type.

Authors:  Ming Li; Wei Zhao; Biao Chen
Journal:  Comput Math Methods Med       Date:  2012-12-05       Impact factor: 2.238

4.  Predicting the post-treatment recovery of patients suffering from traumatic brain injury (TBI).

Authors:  Zaigham Faraz Siddiqui; Georg Krempl; Myra Spiliopoulou; Jose M Peña; Nuria Paul; Fernando Maestu
Journal:  Brain Inform       Date:  2015-02-27

5.  Nearest Consensus Clustering Classification to Identify Subclasses and Predict Disease.

Authors:  Awad A Alyousef; Svetlana Nihtyanova; Chris Denton; Pietro Bosoni; Riccardo Bellazzi; Allan Tucker
Journal:  J Healthc Inform Res       Date:  2018-07-30

6.  Uncovering pseudotemporal trajectories with covariates from single cell and bulk expression data.

Authors:  Kieran R Campbell; Christopher Yau
Journal:  Nat Commun       Date:  2018-06-22       Impact factor: 14.919

  6 in total

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