Literature DB >> 19527636

Mechanisms and constraints on yeast MAPK signaling specificity.

Bo Hu1, Wouter-Jan Rappel, Herbert Levine.   

Abstract

The survival of cells relies on their ability to respond specifically to diverse environmental signals. Surprisingly, intracellular signaling pathways often share the same or homologous protein components, yet undesirable crosstalk is, in general, suppressed. This signaling specificity has been well studied in the yeast model system Saccharomyces cerevisiae, where the mitogen-activated protein kinase (MAPK) cascades are repeatedly employed in mediating distinct biological processes including pheromone-induced mating and filamentous growth under starvation. Although various mechanisms have been proposed to interpret the yeast MAPK signaling specificity, a consistent theory is still lacking. Here, we present a mathematical model that shows signaling specificity can arise through asymmetric hierarchical inhibition. The parameters of our model are, where possible, based on experimental data that allow us to determine the constraints imposed by signaling specificity on these parameters. Our model is in broad agreement with experimental observations to date and generates testable predictions that may stimulate further research.

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Year:  2009        PMID: 19527636      PMCID: PMC2712056          DOI: 10.1016/j.bpj.2009.02.065

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  33 in total

Review 1.  Pheromone response, mating and cell biology.

Authors:  E A Elion
Journal:  Curr Opin Microbiol       Date:  2000-12       Impact factor: 7.934

2.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

3.  Role of scaffolds in MAP kinase pathway specificity revealed by custom design of pathway-dedicated signaling proteins.

Authors:  K Harris; R E Lamson; B Nelson; T R Hughes; M J Marton; C J Roberts; C Boone; P M Pryciak
Journal:  Curr Biol       Date:  2001-11-27       Impact factor: 10.834

4.  Specificity of MAP kinase signaling in yeast differentiation involves transient versus sustained MAPK activation.

Authors:  W Sabbagh; L J Flatauer; A J Bardwell; L Bardwell
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

5.  Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

Authors:  Julia Zeitlinger; Itamar Simon; Christopher T Harbison; Nancy M Hannett; Thomas L Volkert; Gerald R Fink; Richard A Young
Journal:  Cell       Date:  2003-05-02       Impact factor: 41.582

6.  Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms.

Authors:  Sang-Hyun Park; Ali Zarrinpar; Wendell A Lim
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

7.  Two regulators of Ste12p inhibit pheromone-responsive transcription by separate mechanisms.

Authors:  K A Olson; C Nelson; G Tai; W Hung; C Yong; C Astell; I Sadowski
Journal:  Mol Cell Biol       Date:  2000-06       Impact factor: 4.272

Review 8.  Control of pseudohyphae formation in Saccharomyces cerevisiae.

Authors:  J M Gancedo
Journal:  FEMS Microbiol Rev       Date:  2001-01       Impact factor: 16.408

9.  Genomic expression programs in the response of yeast cells to environmental changes.

Authors:  A P Gasch; P T Spellman; C M Kao; O Carmel-Harel; M B Eisen; G Storz; D Botstein; P O Brown
Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

10.  Genetic and epigenetic regulation of the FLO gene family generates cell-surface variation in yeast.

Authors:  Adrian Halme; Stacie Bumgarner; Cora Styles; Gerald R Fink
Journal:  Cell       Date:  2004-02-06       Impact factor: 41.582

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  3 in total

1.  Integral control of plant gravitropism through the interplay of hormone signaling and gene regulation.

Authors:  Guillermo Rodrigo; Alfonso Jaramillo; Miguel A Blázquez
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

2.  Design principles and specificity in biological networks with cross activation.

Authors:  Bo Hu; Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Biol       Date:  2011-01-24       Impact factor: 2.583

3.  Ultrasensitive responses and specificity in cell signaling.

Authors:  Seth Haney; Lee Bardwell; Qing Nie
Journal:  BMC Syst Biol       Date:  2010-08-25
  3 in total

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