Literature DB >> 19522669

A new computational tool for establishing model parameter identifiability.

Elias August1, Antonis Papachristodoulou.   

Abstract

We describe a novel method to establish a priori whether the parameters of a nonlinear dynamical system are identifiable--that is, whether they can be deduced from output data (experimental observations). This is an important question as usually identifiability is assumed, and parameters are sought without first establishing whether these can be inferred from a set of measurements. We highlight the connections between parameter identifiability and state observability. We show how observability criteria can be used to check for identifiability, and we use new, state of the art computational tools to implement our approach. Nonlinear dynamical systems are prevalent in systems biology, where they are often used to represent a biological system. Thus, examples from biology are used to illustrate our method.

Mesh:

Year:  2009        PMID: 19522669     DOI: 10.1089/cmb.2008.0211

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  7 in total

1.  Using noise for model-testing.

Authors:  Elias August
Journal:  J Comput Biol       Date:  2012-08       Impact factor: 1.479

2.  Effective connectivity: influence, causality and biophysical modeling.

Authors:  Pedro A Valdes-Sosa; Alard Roebroeck; Jean Daunizeau; Karl Friston
Journal:  Neuroimage       Date:  2011-04-06       Impact factor: 6.556

3.  Discriminating between rival biochemical network models: three approaches to optimal experiment design.

Authors:  Bence Mélykúti; Elias August; Antonis Papachristodoulou; Hana El-Samad
Journal:  BMC Syst Biol       Date:  2010-04-01

4.  Structural Identifiability of Dynamic Systems Biology Models.

Authors:  Alejandro F Villaverde; Antonio Barreiro; Antonis Papachristodoulou
Journal:  PLoS Comput Biol       Date:  2016-10-28       Impact factor: 4.475

5.  Full observability and estimation of unknown inputs, states and parameters of nonlinear biological models.

Authors:  Alejandro F Villaverde; Nikolaos Tsiantis; Julio R Banga
Journal:  J R Soc Interface       Date:  2019-07-03       Impact factor: 4.118

6.  A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides.

Authors:  Mark A J Roberts; Elias August; Abdullah Hamadeh; Philip K Maini; Patrick E McSharry; Judith P Armitage; Antonis Papachristodoulou
Journal:  BMC Syst Biol       Date:  2009-10-31

7.  Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics.

Authors:  Luca Salerno; Carlo Cosentino; Alessio Merola; Declan G Bates; Francesco Amato
Journal:  BMC Syst Biol       Date:  2013-05-17
  7 in total

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