Literature DB >> 19519142

Lattice model of diffusion-limited bimolecular chemical reactions in confined environments.

Jeremy D Schmit1, Ercan Kamber, Jané Kondev.   

Abstract

We study the effect of confinement on diffusion-limited bimolecular reactions within a lattice model where a small number of reactants diffuse among a much larger number of inert particles. When the number of inert particles is held constant, the rate of the reaction is slow for small reaction volumes due to limited mobility from crowding and for large reaction volumes due to the reduced concentration of the reactants. The reaction rate proceeds fastest at an intermediate confinement corresponding to a volume fraction near 50%. We generalize the model to off-lattice systems with hydrodynamic coupling and predict that the optimal reaction rate for monodisperse colloidal systems occurs when the volume fraction is approximately 19%. Finally, we discuss the implications of our model for bimolecular reactions inside cells and the dynamics of confined polymers.

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Year:  2009        PMID: 19519142     DOI: 10.1103/PhysRevLett.102.218302

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

1.  Physical limits of cells and proteomes.

Authors:  Ken A Dill; Kingshuk Ghosh; Jeremy D Schmit
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-17       Impact factor: 11.205

2.  Dynamics of enzymatic digestion of elastic fibers and networks under tension.

Authors:  Ascânio D Araújo; Arnab Majumdar; Harikrishnan Parameswaran; Eunice Yi; Jean L Spencer; Matthew A Nugent; Béla Suki
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

3.  Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins.

Authors:  David M Umulis; Osamu Shimmi; Michael B O'Connor; Hans G Othmer
Journal:  Dev Cell       Date:  2010-02-16       Impact factor: 12.270

4.  Understanding the cooperative interaction between myosin II and actin cross-linkers mediated by actin filaments during mechanosensation.

Authors:  Tianzhi Luo; Krithika Mohan; Vasudha Srivastava; Yixin Ren; Pablo A Iglesias; Douglas N Robinson
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

Review 5.  How Hierarchical Interactions Make Membraneless Organelles Tick Like Clockwork.

Authors:  Jeremy D Schmit; Marina Feric; Miroslav Dundr
Journal:  Trends Biochem Sci       Date:  2021-01-20       Impact factor: 14.264

6.  Actin assembly produces sufficient forces for endocytosis in yeast.

Authors:  Masoud Nickaeen; Julien Berro; Thomas D Pollard; Boris M Slepchenko
Journal:  Mol Biol Cell       Date:  2019-06-26       Impact factor: 4.138

Review 7.  Role of Proteome Physical Chemistry in Cell Behavior.

Authors:  Kingshuk Ghosh; Adam M R de Graff; Lucas Sawle; Ken A Dill
Journal:  J Phys Chem B       Date:  2016-08-24       Impact factor: 2.991

  7 in total

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