Literature DB >> 19518407

All-or-none proteinlike folding transition of a flexible homopolymer chain.

Mark P Taylor1, Wolfgang Paul, Kurt Binder.   

Abstract

Here we report a first-order all-or-none transition from an expanded coil to a compact crystallite for a flexible polymer chain. Wang-Landau sampling is used to construct the complete density of states for square-well chains up to length 256. Analysis within both the microcanonical and canonical ensembles shows a direct freezing transition for finite length chains with sufficiently short-range interactions. This type of transition is a distinctive feature of "one-step" protein folding and our findings demonstrate that a simple homopolymer model can exhibit protein-folding thermodynamics.

Entities:  

Year:  2009        PMID: 19518407     DOI: 10.1103/PhysRevE.79.050801

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Wang-Landau simulation of Gō model molecules.

Authors:  Arne Böker; Wolfgang Paul
Journal:  Eur Phys J E Soft Matter       Date:  2016-01-27       Impact factor: 1.890

2.  Structural basis of folding cooperativity in model proteins: insights from a microcanonical perspective.

Authors:  Tristan Bereau; Markus Deserno; Michael Bachmann
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

3.  Critical phenomena in the temperature-pressure-crowding phase diagram of a protein.

Authors:  Andrei G Gasic; Mayank M Boob; Maxim B Prigozhin; Dirar Homouz; Anna Jean Wirth; Caleb M Daugherty; Martin Gruebele; Margaret S Cheung
Journal:  Phys Rev X       Date:  2019-11-18       Impact factor: 15.762

4.  First-order coil-globule transition driven by vibrational entropy.

Authors:  Carlo Maffi; Marco Baiesi; Lapo Casetti; Francesco Piazza; Paolo De Los Rios
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

  4 in total

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