Literature DB >> 19515990

Improved cholesterol phenotype analysis by a model relating lipoprotein life cycle processes to particle size.

Daniël B van Schalkwijk1, Albert A de Graaf, Ben van Ommen, Kees van Bochove, Patrick C N Rensen, Louis M Havekes, Niek C A van de Pas, Huub C J Hoefsloot, Jan van der Greef, Andreas P Freidig.   

Abstract

Increased plasma cholesterol is a known risk factor for cardiovascular disease. Lipoprotein particles transport both cholesterol and triglycerides through the blood. It is thought that the size distribution of these particles codetermines cardiovascular disease risk. New types of measurements can determine the concentration of many lipoprotein size-classes but exactly how each small class relates to disease risk is difficult to clear up. Because relating physiological process status to disease risk seems promising, we propose investigating how lipoprotein production, lipolysis, and uptake processes depend on particle size. To do this, we introduced a novel model framework (Particle Profiler) and evaluated its feasibility. The framework was tested using existing stable isotope flux data. The model framework implementation we present here reproduced the flux data and derived lipoprotein size pattern changes that corresponded to measured changes. It also sensitively indicated changes in lipoprotein metabolism between patient groups that are biologically plausible. Finally, the model was able to reproduce the cholesterol and triglyceride phenotype of known genetic diseases like familial hypercholesterolemia and familial hyperchylomicronemia. In the future, Particle Profiler can be applied for analyzing detailed lipoprotein size profile data and deriving rates of various lipolysis and uptake processes if an independent production estimate is given.

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Year:  2009        PMID: 19515990      PMCID: PMC2781312          DOI: 10.1194/jlr.M800354-JLR200

Source DB:  PubMed          Journal:  J Lipid Res        ISSN: 0022-2275            Impact factor:   5.922


  59 in total

1.  Angptl4 upregulates cholesterol synthesis in liver via inhibition of LPL- and HL-dependent hepatic cholesterol uptake.

Authors:  Laeticia Lichtenstein; Jimmy F P Berbée; Susan J van Dijk; Ko Willems van Dijk; André Bensadoun; Ido P Kema; Peter J Voshol; Michael Müller; Patrick C N Rensen; Sander Kersten
Journal:  Arterioscler Thromb Vasc Biol       Date:  2007-08-30       Impact factor: 8.311

Review 2.  Association of cholesteryl ester transfer protein genotypes with CETP mass and activity, lipid levels, and coronary risk.

Authors:  Alexander Thompson; Emanuele Di Angelantonio; Nadeem Sarwar; Sebhat Erqou; Danish Saleheen; Robin P F Dullaart; Bernard Keavney; Zheng Ye; John Danesh
Journal:  JAMA       Date:  2008-06-18       Impact factor: 56.272

3.  Scavenger receptor BI facilitates the metabolism of VLDL lipoproteins in vivo.

Authors:  Miranda Van Eck; Menno Hoekstra; Ruud Out; I Sophie T Bos; J Kar Kruijt; Reeni B Hildebrand; Theo J C Van Berkel
Journal:  J Lipid Res       Date:  2007-10-22       Impact factor: 5.922

Review 4.  Endothelial lipase and the metabolic syndrome.

Authors:  Benoît Lamarche; Marie-Eve Paradis
Journal:  Curr Opin Lipidol       Date:  2007-06       Impact factor: 4.776

5.  General model to describe the structure and dynamic balance between different human serum lipoproteins and its practical application.

Authors:  Fedor V Tuzikov; Nataliya A Tuzikova; Ravil V Galimov; Lev E Panin; Gregory A Nevinsky
Journal:  Med Sci Monit       Date:  2002-06

Review 6.  The physiological and molecular regulation of lipoprotein assembly and secretion.

Authors:  Daniel A Blasiole; Roger A Davis; Alan D Attie
Journal:  Mol Biosyst       Date:  2007-07-16

Review 7.  Lipid droplets as dynamic organelles connecting storage and efflux of lipids.

Authors:  Sven-Olof Olofsson; Pontus Boström; Linda Andersson; Mikael Rutberg; Jeanna Perman; Jan Borén
Journal:  Biochim Biophys Acta       Date:  2008-08-13

Review 8.  Effect of plasma triglyceride metabolism on lipid storage in adipose tissue: studies using genetically engineered mouse models.

Authors:  Peter J Voshol; Patrick C N Rensen; Ko Willems van Dijk; Johannes A Romijn; Louis M Havekes
Journal:  Biochim Biophys Acta       Date:  2009-01-08

9.  Development of a novel method to determine very low density lipoprotein kinetics.

Authors:  Iqbal A R Al-Shayji; Jason M R Gill; Josephine Cooney; Samira Siddiqui; Muriel J Caslake
Journal:  J Lipid Res       Date:  2007-06-04       Impact factor: 5.922

10.  Computational lipidology: predicting lipoprotein density profiles in human blood plasma.

Authors:  Katrin Hübner; Thomas Schwager; Karl Winkler; Jens-Georg Reich; Hermann-Georg Holzhütter
Journal:  PLoS Comput Biol       Date:  2008-05-23       Impact factor: 4.475

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  12 in total

1.  A physiologically based in silico kinetic model predicting plasma cholesterol concentrations in humans.

Authors:  Niek C A van de Pas; Ruud A Woutersen; Ben van Ommen; Ivonne M C M Rietjens; Albert A de Graaf
Journal:  J Lipid Res       Date:  2012-09-29       Impact factor: 5.922

2.  In silico modeling of the dynamics of low density lipoprotein composition via a single plasma sample.

Authors:  Martin Jansen; Peter Pfaffelhuber; Michael M Hoffmann; Gerhard Puetz; Karl Winkler
Journal:  J Lipid Res       Date:  2016-03-25       Impact factor: 5.922

3.  Clustering by plasma lipoprotein profile reveals two distinct subgroups with positive lipid response to fenofibrate therapy.

Authors:  Kees van Bochove; Daniël B van Schalkwijk; Laurence D Parnell; Chao-Qiang Lai; José M Ordovás; Albert A de Graaf; Ben van Ommen; Donna K Arnett
Journal:  PLoS One       Date:  2012-06-12       Impact factor: 3.240

4.  Diagnostic markers based on a computational model of lipoprotein metabolism.

Authors:  Daniël B van Schalkwijk; Ben van Ommen; Andreas P Freidig; Jan van der Greef; Albert A de Graaf
Journal:  J Clin Bioinforma       Date:  2011-10-26

5.  A computational model for the analysis of lipoprotein distributions in the mouse: translating FPLC profiles to lipoprotein metabolism.

Authors:  Fianne L P Sips; Christian A Tiemann; Maaike H Oosterveer; Albert K Groen; Peter A J Hilbers; Natal A W van Riel
Journal:  PLoS Comput Biol       Date:  2014-05-01       Impact factor: 4.475

6.  Dietary medium chain fatty acid supplementation leads to reduced VLDL lipolysis and uptake rates in comparison to linoleic acid supplementation.

Authors:  Daniël B van Schalkwijk; Wilrike J Pasman; Henk F J Hendriks; Elwin R Verheij; Carina M Rubingh; Kees van Bochove; Wouter H J Vaes; Martin Adiels; Andreas P Freidig; Albert A de Graaf
Journal:  PLoS One       Date:  2014-07-21       Impact factor: 3.240

Review 7.  Nutritional systems biology modeling: from molecular mechanisms to physiology.

Authors:  Albert A de Graaf; Andreas P Freidig; Baukje De Roos; Neema Jamshidi; Matthias Heinemann; Johan A C Rullmann; Kevin D Hall; Martin Adiels; Ben van Ommen
Journal:  PLoS Comput Biol       Date:  2009-11-26       Impact factor: 4.475

8.  Parameter trajectory analysis to identify treatment effects of pharmacological interventions.

Authors:  Christian A Tiemann; Joep Vanlier; Maaike H Oosterveer; Albert K Groen; Peter A J Hilbers; Natal A W van Riel
Journal:  PLoS Comput Biol       Date:  2013-08-01       Impact factor: 4.475

9.  Lipoprotein metabolism indicators improve cardiovascular risk prediction.

Authors:  Daniël B van Schalkwijk; Albert A de Graaf; Evgeni Tsivtsivadze; Laurence D Parnell; Bianca J C van der Werff-van der Vat; Ben van Ommen; Jan van der Greef; José M Ordovás
Journal:  PLoS One       Date:  2014-03-25       Impact factor: 3.240

10.  An in-silico model of lipoprotein metabolism and kinetics for the evaluation of targets and biomarkers in the reverse cholesterol transport pathway.

Authors:  James Lu; Katrin Hübner; M Nazeem Nanjee; Eliot A Brinton; Norman A Mazer
Journal:  PLoS Comput Biol       Date:  2014-03-13       Impact factor: 4.475

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