Literature DB >> 19515839

Inaccuracy of single-target sequencing for discriminating species of the Mycobacterium abscessus group.

Edouard Macheras1, Anne-Laure Roux, Fabienne Ripoll, Valérie Sivadon-Tardy, Cristina Gutierrez, Jean-Louis Gaillard, Beate Heym.   

Abstract

We determined nucleotide sequences of rpoB, hsp65, and sodA in 59 clinical isolates (from 58 patients) of the Mycobacterium abscessus group. Identification to the species level, based on three target genes, was concordant for 44 isolates (25 M. abscessus, 13 Mycobacterium massiliense, and 6 Mycobacterium bolletii isolates) and discordant for 15 isolates which had "interspecific composite patterns." Sequence analysis of five housekeeping genes also showed composite patterns in 8 of these 15 isolates.

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Year:  2009        PMID： 19515839      PMCID： PMC2725694          DOI： 10.1128/JCM.00037-09

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  35 in total

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2.  Bacterial identification for publication: when is enough enough?

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3.  Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov.

Authors:  S Kusunoki; T Ezaki
Journal:  Int J Syst Bacteriol       Date:  1992-04

4.  A co-operative numerical analysis of rapidly growing mycobacteria.

Authors:  G P Kubica; I Baess; R E Gordon; P A Jenkins; J B Kwapinski; C McDurmont; S R Pattyn; H Saito; V Silcox; J L Stanford; K Takeya; M Tsukamura
Journal:  J Gen Microbiol       Date:  1972-11

5.  Studies on Mycobacterium chelonei.

Authors:  J L Stanford; S R Pattyn; F Portaels; W J Gunthorpe
Journal:  J Med Microbiol       Date:  1972-05       Impact factor: 2.472

6.  Evaluation of recA sequences for identification of Mycobacterium species.

Authors:  K S Blackwood; C He; J Gunton; C Y Turenne; J Wolfe; A M Kabani
Journal:  J Clin Microbiol       Date:  2000-08       Impact factor: 5.948

7.  Lack of transmission of mycobacterium abscessus among patients with cystic fibrosis attending a single clinic.

Authors:  F C Bange; B A Brown; C Smaczny; R J Wallace; E C Böttger
Journal:  Clin Infect Dis       Date:  2001-04-30       Impact factor: 9.079

8.  rpoB-based identification of nonpigmented and late-pigmenting rapidly growing mycobacteria.

Authors:  Toïdi Adékambi; Philippe Colson; Michel Drancourt
Journal:  J Clin Microbiol       Date:  2003-12       Impact factor: 5.948

Review 9.  Clinical and taxonomic status of pathogenic nonpigmented or late-pigmenting rapidly growing mycobacteria.

Authors:  Barbara A Brown-Elliott; Richard J Wallace
Journal:  Clin Microbiol Rev       Date:  2002-10       Impact factor: 26.132

10.  Mycobacterium abscessus and children with cystic fibrosis.

Authors:  Isabelle Sermet-Gaudelus; Muriel Le Bourgeois; Catherine Pierre-Audigier; Catherine Offredo; Didier Guillemot; Sophie Halley; Chantal Akoua-Koffi; Véronique Vincent; Valérie Sivadon-Tardy; Agnès Ferroni; Patrick Berche; Pierre Scheinmann; Gérard Lenoir; Jean-Louis Gaillard
Journal:  Emerg Infect Dis       Date:  2003-12       Impact factor: 6.883
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  40 in total

1.  Simultaneous sequence analysis of the 16S rRNA and rpoB genes by use of RipSeq software to identify Mycobacterium species.

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Journal:  J Clin Microbiol       Date:  2010-07-07       Impact factor: 5.948

2.  Comparison of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of mycobacteria using simplified protein extraction protocols.

Authors:  Cheryl A Mather; Sheila F Rivera; Susan M Butler-Wu
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3.  Comparing the Utilities of Different Multilocus Sequence Typing Schemes for Identifying Outbreak Strains of Mycobacterium abscessus subsp. massiliense.

Authors:  Aristine Cheng; Hsin-Yun Sun; Yi-Tzu Tsai; Shu-Yuan Chang; Un-In Wu; Po-Ren Hsueh; Wang-Huei Sheng; Yee-Chun Chen; Shan-Chwen Chang
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4.  Identification of mycobacteria in solid-culture media by matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Authors:  Paul G Saleeb; Steven K Drake; Patrick R Murray; Adrian M Zelazny
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5.  "You can't always get what you want…" the Mycobacterium abscessus issue. Name versus function.

Authors:  Adrian M Zelazny; Kenneth N Olivier
Journal:  Ann Am Thorac Soc       Date:  2015-03

6.  New rapid scheme for distinguishing the subspecies of the Mycobacterium abscessus group and identifying Mycobacterium massiliense isolates with inducible clarithromycin resistance.

Authors:  Shamira J Shallom; Paul J Gardina; Timothy G Myers; Yinong Sebastian; Patricia Conville; Leslie B Calhoun; Hervé Tettelin; Kenneth N Olivier; Gulbu Uzel; Elizabeth P Sampaio; Steven M Holland; Adrian M Zelazny
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7.  Genome sequence of Mycobacterium massiliense M18, isolated from a lymph node biopsy specimen.

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Journal:  J Bacteriol       Date:  2012-08       Impact factor: 3.490

8.  Genome sequence of the Mycobacterium abscessus strain M93.

Authors:  Siew Woh Choo; Yan Ling Wong; Aini Mohamed Yusoff; Mee Lian Leong; Guat Jah Wong; Chia Sui Ong; Kee Peng Ng; Yun Fong Ngeow
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9.  Distribution of nontuberculous mycobacteria by multigene sequence-based typing and clinical significance of isolated strains.

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10.  Rapid molecular detection of inducible macrolide resistance in Mycobacterium chelonae and M. abscessus strains: a replacement for 14-day susceptibility testing?

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Journal:  J Clin Microbiol       Date:  2014-02-19       Impact factor: 5.948
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